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The map label for this gene is yhcM [H]

Identifier: 120611903

GI number: 120611903

Start: 3581616

End: 3582713

Strand: Reverse

Name: yhcM [H]

Synonym: Aave_3245

Alternate gene names: 120611903

Gene position: 3582713-3581616 (Counterclockwise)

Preceding gene: 120611904

Following gene: 120611902

Centisome position: 66.93

GC content: 67.49

Gene sequence:

>1098_bases
GTGAACGTGAAGCAGGCGTATGAGGCCGAGCTGGCCGCCAAGGGGTTCCGCAGCGACCCGGCCCAGCTGAGGGCCGTCGA
GGCGCTGCAGCGCTGCGCGGACGACTGGGCCGCCTACAAGGAAAAGCGCTCCAACGCCCTGAAGAAGCTCATCAACCGCC
CCGACGTGCCGCGCGGCGTGTACATGTACGGCGGCGTGGGCCGCGGCAAGAGCTTCCTGATGGACTGCTTCTTCAACGCG
GTGCCCATCCGCCGCAAGGTGCGCCTGCATTTCCATGAGTTCATGCGCGAGGTGCACCGCGAACTGGCGGGCCTGCAGGG
CACCGTGAACCCGCTGGACGTGCTGGGCGAGCGCATCGCCAGGCGCTACAAGCTCATCTGCTTCGACGAATTCCATGTGG
CGGACATCACGGACGCCATGATCCTGCACCGCCTGCTGGCGGCGCTGTTCGACAACGGCGTGGGCTTCGTCACCACGTCC
AACTTCAAGCCCGACGACCTGTACCCGGGCGGCCTGCACCGCGACCGCATCCTGCCTGCCATCGACCTGCTCAACCAGAA
GCTGGAGGTGGTGAACGTGGACAACGGCACCGACTACCGGCGGCGCACGCTGGAGCAGGTCCGGCTCTACCACTGTCCGC
TGGGGCCGCAGGCGGAGGCCGAGATGGAGGCCGCCTTCGACCAGCTCGCCGAAAGCCGCGACGAGGATCCGGTGCTGCAC
ATCGAGGCGCGCGAGATCCGGGCGCGCCGCAAGGCCGGCGGCGTGGTGTGGTTCGATTTCGACGTGCTGTGCGGCGGTCC
GCGCTCGCAGAACGACTACCTGGAAATCGCGTCGCAGTTCCATACCGTGCTGCTGTCGAACGTGCCTTACATGCCCGTGG
CGATGGCATCCCCGGCCCGGCGCTTCACCTGGCTGGTGGACGTGCTCTACGACCGGCGCGTCAAGCTCATCATGTCGGCC
GCCGTGCCGCCCGAGCAGCTCTACACCGAGGGGCCGCTCGCGCACGAGTTTCCCCGTACCGTATCCCGCCTCAATGAAAT
GCAGTCCAGGGAGTTCCTGGCGCTCGAGCGCCGGGTGGTGGACACGGGGCTGACCTGA

Upstream 100 bases:

>100_bases
GCGCGCCGCGCTCCCCCGGGCTGCCGGCGCGCGCATCCGCGTGCCGGCAGCCGTTGTTTTTCATGTGGATGCGTTGATCG
ATTGCGTGGGAGAGACGTCC

Downstream 100 bases:

>100_bases
AGTCGCCCGCAAAGGATTTACGCATGACGAACTCTTCACTGCCTTCCCTTCTCCGCGCCCTCGCCCTGGCGGTGTCCTGG
GCGCTGCTGACCGTTGCCGG

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNVKQAYEAELAAKGFRSDPAQLRAVEALQRCADDWAAYKEKRSNALKKLINRPDVPRGVYMYGGVGRGKSFLMDCFFNA
VPIRRKVRLHFHEFMREVHRELAGLQGTVNPLDVLGERIARRYKLICFDEFHVADITDAMILHRLLAALFDNGVGFVTTS
NFKPDDLYPGGLHRDRILPAIDLLNQKLEVVNVDNGTDYRRRTLEQVRLYHCPLGPQAEAEMEAAFDQLAESRDEDPVLH
IEAREIRARRKAGGVVWFDFDVLCGGPRSQNDYLEIASQFHTVLLSNVPYMPVAMASPARRFTWLVDVLYDRRVKLIMSA
AVPPEQLYTEGPLAHEFPRTVSRLNEMQSREFLALERRVVDTGLT

Sequences:

>Translated_365_residues
MNVKQAYEAELAAKGFRSDPAQLRAVEALQRCADDWAAYKEKRSNALKKLINRPDVPRGVYMYGGVGRGKSFLMDCFFNA
VPIRRKVRLHFHEFMREVHRELAGLQGTVNPLDVLGERIARRYKLICFDEFHVADITDAMILHRLLAALFDNGVGFVTTS
NFKPDDLYPGGLHRDRILPAIDLLNQKLEVVNVDNGTDYRRRTLEQVRLYHCPLGPQAEAEMEAAFDQLAESRDEDPVLH
IEAREIRARRKAGGVVWFDFDVLCGGPRSQNDYLEIASQFHTVLLSNVPYMPVAMASPARRFTWLVDVLYDRRVKLIMSA
AVPPEQLYTEGPLAHEFPRTVSRLNEMQSREFLALERRVVDTGLT
>Mature_365_residues
MNVKQAYEAELAAKGFRSDPAQLRAVEALQRCADDWAAYKEKRSNALKKLINRPDVPRGVYMYGGVGRGKSFLMDCFFNA
VPIRRKVRLHFHEFMREVHRELAGLQGTVNPLDVLGERIARRYKLICFDEFHVADITDAMILHRLLAALFDNGVGFVTTS
NFKPDDLYPGGLHRDRILPAIDLLNQKLEVVNVDNGTDYRRRTLEQVRLYHCPLGPQAEAEMEAAFDQLAESRDEDPVLH
IEAREIRARRKAGGVVWFDFDVLCGGPRSQNDYLEIASQFHTVLLSNVPYMPVAMASPARRFTWLVDVLYDRRVKLIMSA
AVPPEQLYTEGPLAHEFPRTVSRLNEMQSREFLALERRVVDTGLT

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=394, Percent_Identity=34.010152284264, Blast_Score=236, Evalue=3e-62,
Organism=Escherichia coli, GI1789627, Length=300, Percent_Identity=48, Blast_Score=280, Evalue=9e-77,
Organism=Caenorhabditis elegans, GI17505769, Length=415, Percent_Identity=31.3253012048193, Blast_Score=207, Evalue=5e-54,
Organism=Saccharomyces cerevisiae, GI6320783, Length=351, Percent_Identity=31.3390313390313, Blast_Score=167, Evalue=2e-42,
Organism=Drosophila melanogaster, GI20129913, Length=345, Percent_Identity=36.231884057971, Blast_Score=181, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 41701; Mature: 41701

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVKQAYEAELAAKGFRSDPAQLRAVEALQRCADDWAAYKEKRSNALKKLINRPDVPRGV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YMYGGVGRGKSFLMDCFFNAVPIRRKVRLHFHEFMREVHRELAGLQGTVNPLDVLGERIA
EEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RRYKLICFDEFHVADITDAMILHRLLAALFDNGVGFVTTSNFKPDDLYPGGLHRDRILPA
HHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHH
IDLLNQKLEVVNVDNGTDYRRRTLEQVRLYHCPLGPQAEAEMEAAFDQLAESRDEDPVLH
HHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
IEAREIRARRKAGGVVWFDFDVLCGGPRSQNDYLEIASQFHTVLLSNVPYMPVAMASPAR
EEHHHHHHHHHHCCEEEEEEHEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCHH
RFTWLVDVLYDRRVKLIMSAAVPPEQLYTEGPLAHEFPRTVSRLNEMQSREFLALERRVV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTGLT
HCCCC
>Mature Secondary Structure
MNVKQAYEAELAAKGFRSDPAQLRAVEALQRCADDWAAYKEKRSNALKKLINRPDVPRGV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YMYGGVGRGKSFLMDCFFNAVPIRRKVRLHFHEFMREVHRELAGLQGTVNPLDVLGERIA
EEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
RRYKLICFDEFHVADITDAMILHRLLAALFDNGVGFVTTSNFKPDDLYPGGLHRDRILPA
HHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHH
IDLLNQKLEVVNVDNGTDYRRRTLEQVRLYHCPLGPQAEAEMEAAFDQLAESRDEDPVLH
HHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
IEAREIRARRKAGGVVWFDFDVLCGGPRSQNDYLEIASQFHTVLLSNVPYMPVAMASPAR
EEHHHHHHHHHHCCEEEEEEHEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCHH
RFTWLVDVLYDRRVKLIMSAAVPPEQLYTEGPLAHEFPRTVSRLNEMQSREFLALERRVV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTGLT
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]