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The map label for this gene is sodA [H]

Identifier: 120611330

GI number: 120611330

Start: 2922336

End: 2922968

Strand: Direct

Name: sodA [H]

Synonym: Aave_2662

Alternate gene names: 120611330

Gene position: 2922336-2922968 (Clockwise)

Preceding gene: 120611321

Following gene: 120611331

Centisome position: 54.59

GC content: 67.61

Gene sequence:

>633_bases
ATGCCGCACACGCTGCCCGCCTTGCCTTACGCCTACGATGCCCTGGAGCCGCACATCGATGCGCGCACCATGGAGATCCA
CCACACCAAGCACCACCAGACCTACGTCAACAATCTGAACGCCGCGCTGGAAGGCACGCCGCATGCCGACACCCCGGTGG
ATCAACTCGTCGCGGGCCTTCGGTCCTTGCCGGAATCACTGCAGACGGCCGTGCGCAACAACGGCGGAGGCCATGCCAAC
CACAGCCTGTTCTGGACCGTCATGGCTCCCGAAGGGCAGGGCGGCGGCGGACAGCCGGGCGGTGCGCTCGGCGAGGCGAT
CGACCGGGACCTGGGCGGTTTCGATGCGTTCAAGGAGGCTTTCACCAAGGCGGCGCTCACCCGCTTCGGCAGCGGCTGGG
CCTGGCTGGTGGTCGATGGTGCCGGCCGGCTCGCGGTCGAGAGCAGCGGCAACCAGGACAGCCCGCTCATGGCCGGGCTG
CTGTCCGGGCACACGCCGATCCTCGGACTCGATGTGTGGGAGCACGCCTACTACCTTCAGTACCAGAACCGGCGCCCTGA
ATACATCGCCGCGTTCTATCGTGTGATCCGTTGGGACGAGGTGGCGCGCCGGTACGCGAAGGCCCGCGGCTGA

Upstream 100 bases:

>100_bases
GGGAAGGACCATGTCCTACTTGACATGGTTGAGAATAAAAATAATTATCATTTGATTTCATCGATTCTTTTTCATTCGAC
CCAGCCAGAAGGTGACCCCC

Downstream 100 bases:

>100_bases
CTCCGCCGACGTCCCCGCCCGTCCCCGAACGCCCGGGATCTTCATCGTGGAAAACCCGCCGGAGCCTCCGTCCATGCCCG
CCCAGAACACGCTTTCACTG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MPHTLPALPYAYDALEPHIDARTMEIHHTKHHQTYVNNLNAALEGTPHADTPVDQLVAGLRSLPESLQTAVRNNGGGHAN
HSLFWTVMAPEGQGGGGQPGGALGEAIDRDLGGFDAFKEAFTKAALTRFGSGWAWLVVDGAGRLAVESSGNQDSPLMAGL
LSGHTPILGLDVWEHAYYLQYQNRRPEYIAAFYRVIRWDEVARRYAKARG

Sequences:

>Translated_210_residues
MPHTLPALPYAYDALEPHIDARTMEIHHTKHHQTYVNNLNAALEGTPHADTPVDQLVAGLRSLPESLQTAVRNNGGGHAN
HSLFWTVMAPEGQGGGGQPGGALGEAIDRDLGGFDAFKEAFTKAALTRFGSGWAWLVVDGAGRLAVESSGNQDSPLMAGL
LSGHTPILGLDVWEHAYYLQYQNRRPEYIAAFYRVIRWDEVARRYAKARG
>Mature_209_residues
PHTLPALPYAYDALEPHIDARTMEIHHTKHHQTYVNNLNAALEGTPHADTPVDQLVAGLRSLPESLQTAVRNNGGGHANH
SLFWTVMAPEGQGGGGQPGGALGEAIDRDLGGFDAFKEAFTKAALTRFGSGWAWLVVDGAGRLAVESSGNQDSPLMAGLL
SGHTPILGLDVWEHAYYLQYQNRRPEYIAAFYRVIRWDEVARRYAKARG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=208, Percent_Identity=49.5192307692308, Blast_Score=197, Evalue=4e-51,
Organism=Homo sapiens, GI67782305, Length=208, Percent_Identity=49.5192307692308, Blast_Score=197, Evalue=4e-51,
Organism=Homo sapiens, GI67782309, Length=208, Percent_Identity=39.9038461538462, Blast_Score=143, Evalue=1e-34,
Organism=Escherichia coli, GI1790342, Length=212, Percent_Identity=59.9056603773585, Blast_Score=258, Evalue=3e-70,
Organism=Escherichia coli, GI1787946, Length=206, Percent_Identity=43.6893203883495, Blast_Score=179, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI17506561, Length=210, Percent_Identity=43.8095238095238, Blast_Score=170, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI17569479, Length=208, Percent_Identity=41.3461538461538, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=42.0289855072464, Blast_Score=155, Evalue=4e-39,
Organism=Drosophila melanogaster, GI17136812, Length=210, Percent_Identity=43.8095238095238, Blast_Score=173, Evalue=9e-44,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22910; Mature: 22779

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHTLPALPYAYDALEPHIDARTMEIHHTKHHQTYVNNLNAALEGTPHADTPVDQLVAGL
CCCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
RSLPESLQTAVRNNGGGHANHSLFWTVMAPEGQGGGGQPGGALGEAIDRDLGGFDAFKEA
HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
FTKAALTRFGSGWAWLVVDGAGRLAVESSGNQDSPLMAGLLSGHTPILGLDVWEHAYYLQ
HHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHCCCCCEEEHHHHHHHEEEE
YQNRRPEYIAAFYRVIRWDEVARRYAKARG
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PHTLPALPYAYDALEPHIDARTMEIHHTKHHQTYVNNLNAALEGTPHADTPVDQLVAGL
CCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
RSLPESLQTAVRNNGGGHANHSLFWTVMAPEGQGGGGQPGGALGEAIDRDLGGFDAFKEA
HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
FTKAALTRFGSGWAWLVVDGAGRLAVESSGNQDSPLMAGLLSGHTPILGLDVWEHAYYLQ
HHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHCCCCCEEEHHHHHHHEEEE
YQNRRPEYIAAFYRVIRWDEVARRYAKARG
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8244935; 8806672; 10984043 [H]