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The map label for this gene is yjhH [C]

Identifier: 120611255

GI number: 120611255

Start: 2833335

End: 2834246

Strand: Reverse

Name: yjhH [C]

Synonym: Aave_2587

Alternate gene names: 120611255

Gene position: 2834246-2833335 (Counterclockwise)

Preceding gene: 120611256

Following gene: 120611254

Centisome position: 52.95

GC content: 67.0

Gene sequence:

>912_bases
ATGCAACCTCAAGAACTCAAGACCATCATGGGCTCCGGCCTGCTGTCCTTTCCGCTGACGGACTTCGACAGCGAAGGCCA
CTTCAACGCCCGCGGCTATGCCGAACGCCTCGAATGGCTCGCCCCGTACGGCGCCAGCGCCCTCTTCGCGGCCGGCGGCA
CGGGCGAATTCTTCTCGCTCACCGCCGACGAGTACCCGGCCATCATCGAGACCGCCGTGCAGACCTGCCGCGGCAAGGTG
CCGATCATCGCGGGCGCCGGCGGCCCGACGCGCTTCGCCATCCAGTGCGCCCAGGCCGCCGAGAAGGCCGGCGCCCACGG
CATCCTGCTGCTGCCGCACTACCTCACCGAGGCCGGCCAGGAGGGCCTGGCAGCACACGTCGAGGCCGTCTGCAAGAGCG
TGAAGTTCGGCGTCATCGTCTATAACCGCGGCCAAAGCCGCTTCACGCCCGAGACGCTCGCGCGCCTGGCCGAGCGCAAC
GCCAACCTCGTGGGCTTCAAGGACGGCGTCGGCGACATCGAGCTGATGAACTCCATCTACATGAAGATGGGCGACCGCTT
CGCCTACCTGGGCGGCCTGCCCACTGCCGAGGTGTATGCGGCCGCGTACAAGGCCCTGGGCACACCGGTGTATTCCTCGG
CGGTTTTCAACTTCATCCCGAAAACGGCGATGGACTTCTATCACGCGGTGGCGAACGACGACCAGGCCACGCAGCACCGG
CTGCTGCGCAGCTTCTTCATGCCCTACCTGGCATTGCGCAACCGCATGCCGGGCTATGCGGTGAGCATCGTGAAGGCCGG
AGCGAAGATCGTCGGGCACGACGCGGGACCGGTCCGCGCGCCGCTCACCGACCTCAAGGCCGACGAGATGGCCGCCCTCA
AGGCACTCATCGACCAGCTCGGTCCGCAGTAA

Upstream 100 bases:

>100_bases
GTGTCGGCAGCCCAGATCCGCCTGGACTGACGCCCGCCCCGTCTGCAGGAGCAGTTCCTCACCTCCACCGCTTTTTTCCA
CTCGCTTCCGGCCCCCCGCC

Downstream 100 bases:

>100_bases
GCGGAACCGCCAACGAGACGCTGCGCGGCGCGTGCCGCGAGGAAGCTTCCCGGGCGCCGCGGGACGCGGCGTCCGGGGGG
TACCCGACGACGAACTGCCG

Product: 5-dehydro-4-deoxyglucarate dehydratase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MQPQELKTIMGSGLLSFPLTDFDSEGHFNARGYAERLEWLAPYGASALFAAGGTGEFFSLTADEYPAIIETAVQTCRGKV
PIIAGAGGPTRFAIQCAQAAEKAGAHGILLLPHYLTEAGQEGLAAHVEAVCKSVKFGVIVYNRGQSRFTPETLARLAERN
ANLVGFKDGVGDIELMNSIYMKMGDRFAYLGGLPTAEVYAAAYKALGTPVYSSAVFNFIPKTAMDFYHAVANDDQATQHR
LLRSFFMPYLALRNRMPGYAVSIVKAGAKIVGHDAGPVRAPLTDLKADEMAALKALIDQLGPQ

Sequences:

>Translated_303_residues
MQPQELKTIMGSGLLSFPLTDFDSEGHFNARGYAERLEWLAPYGASALFAAGGTGEFFSLTADEYPAIIETAVQTCRGKV
PIIAGAGGPTRFAIQCAQAAEKAGAHGILLLPHYLTEAGQEGLAAHVEAVCKSVKFGVIVYNRGQSRFTPETLARLAERN
ANLVGFKDGVGDIELMNSIYMKMGDRFAYLGGLPTAEVYAAAYKALGTPVYSSAVFNFIPKTAMDFYHAVANDDQATQHR
LLRSFFMPYLALRNRMPGYAVSIVKAGAKIVGHDAGPVRAPLTDLKADEMAALKALIDQLGPQ
>Mature_303_residues
MQPQELKTIMGSGLLSFPLTDFDSEGHFNARGYAERLEWLAPYGASALFAAGGTGEFFSLTADEYPAIIETAVQTCRGKV
PIIAGAGGPTRFAIQCAQAAEKAGAHGILLLPHYLTEAGQEGLAAHVEAVCKSVKFGVIVYNRGQSRFTPETLARLAERN
ANLVGFKDGVGDIELMNSIYMKMGDRFAYLGGLPTAEVYAAAYKALGTPVYSSAVFNFIPKTAMDFYHAVANDDQATQHR
LLRSFFMPYLALRNRMPGYAVSIVKAGAKIVGHDAGPVRAPLTDLKADEMAALKALIDQLGPQ

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family

Homologues:

Organism=Escherichia coli, GI87082415, Length=271, Percent_Identity=29.520295202952, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788823, Length=187, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786463, Length=230, Percent_Identity=28.2608695652174, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDGD_ACIAC (A1TQC1)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_970933.1
- ProteinModelPortal:   A1TQC1
- SMR:   A1TQC1
- STRING:   A1TQC1
- GeneID:   4669516
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_2587
- NMPDR:   fig|397945.5.peg.2216
- eggNOG:   COG0329
- HOGENOM:   HBG358848
- OMA:   RNRKKGY
- ProtClustDB:   PRK03620
- BioCyc:   AAVE397945:AAVE_2587-MONOMER
- HAMAP:   MF_00694
- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR12128
- TIGRFAMs:   TIGR03249

Pfam domain/function: PF00701 DHDPS

EC number: =4.2.1.41

Molecular weight: Translated: 32516; Mature: 32516

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPQELKTIMGSGLLSFPLTDFDSEGHFNARGYAERLEWLAPYGASALFAAGGTGEFFSL
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEE
TADEYPAIIETAVQTCRGKVPIIAGAGGPTRFAIQCAQAAEKAGAHGILLLPHYLTEAGQ
CCHHCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHCCH
EGLAAHVEAVCKSVKFGVIVYNRGQSRFTPETLARLAERNANLVGFKDGVGDIELMNSIY
HHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
MKMGDRFAYLGGLPTAEVYAAAYKALGTPVYSSAVFNFIPKTAMDFYHAVANDDQATQHR
HHHCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LLRSFFMPYLALRNRMPGYAVSIVKAGAKIVGHDAGPVRAPLTDLKADEMAALKALIDQL
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHHHH
GPQ
CCC
>Mature Secondary Structure
MQPQELKTIMGSGLLSFPLTDFDSEGHFNARGYAERLEWLAPYGASALFAAGGTGEFFSL
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEE
TADEYPAIIETAVQTCRGKVPIIAGAGGPTRFAIQCAQAAEKAGAHGILLLPHYLTEAGQ
CCHHCHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHCCH
EGLAAHVEAVCKSVKFGVIVYNRGQSRFTPETLARLAERNANLVGFKDGVGDIELMNSIY
HHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
MKMGDRFAYLGGLPTAEVYAAAYKALGTPVYSSAVFNFIPKTAMDFYHAVANDDQATQHR
HHHCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LLRSFFMPYLALRNRMPGYAVSIVKAGAKIVGHDAGPVRAPLTDLKADEMAALKALIDQL
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCEECCCCCCCCCCHHHCCHHHHHHHHHHHHHH
GPQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA