Click here to switch to the map view.

The map label for this gene is yafC [H]

Identifier: 120611192

GI number: 120611192

Start: 2768468

End: 2769277

Strand: Reverse

Name: yafC [H]

Synonym: Aave_2523

Alternate gene names: 120611192

Gene position: 2769277-2768468 (Counterclockwise)

Preceding gene: 120611193

Following gene: 120611190

Centisome position: 51.74

GC content: 69.75

Gene sequence:

>810_bases
ATGCAGACGCAGGCGAGCACGTGCAGGCGCCGGCCGCGGTCCGGATCGGGCGGACTGGGGGACGACCTGGACGACGCCCG
CGCCATGGTGTCGCAATCGGCCGCCGCGCCGCGCGGCCGGCTGCGGGTGAGCGTGCCCGCCCACCACCTGCTCCTGCCCC
TGCTGCCGGAGTTCCTGGAGCGCCATCCCCAGGTAGAACTGGACATTGACTTCAACGTCCGCATCGTGGACCTGATCGGC
GAAGGCGTGGACATCGCCATCCGCAGCGGCGACCTGCCCGATTCGCGGCTCAGGAGCCAGCCCCTGCGGCACTACCGGTC
CCTGCTCTGCGCATCGCCCGATTACTTGGCGCGGCGCGGCCCTCCGGCCACCGTGGGCGACCTCGCGGACCACGACGGCA
TTGCGTTCCGCTATCCCAATTCAGGGCAGTGGCTGCCCTGGCCACTGCCGGGGACCGGCGGAGCCACGGTGCCAGAAGAG
CCGCCCCCACCGCTGTCGATGTCGTCGGCGCCATCGCCATCCCCCCTGCCCCGCCTGCGCCGGGTCCTCGGGTTCAACAA
CATGGAGGCCGTGCGCGGCGCGGCGCTGGGCGGCCTGGGAATCGGGTGCATGCCGGATTTCCTGTTGGAGGGGCCTTTGC
GGGAAGGGGCATTACGGCAGGTGCTGCCGGATCCAGAGGGACGGCCGGCAGGACGGTTCCGGGCGGTGTGGCCGACGAGC
CGGCAGTTGTCGCCGAAGGTGCGGGTGTTTGTGGATTTTTTGAGGGGGAGGTTGGGGGATCGACAAGAAACCATTAAATC
GATGGCTTGA

Upstream 100 bases:

>100_bases
CCCCGCCAGACCCTGCAGGCCGCGCGCAAGCAGCGCATCGGCTATGCCGCCCAGGGCCACGGCCGGCCCGGTGAACACCA
TCGGCATCGTCGCCGAAGCC

Downstream 100 bases:

>100_bases
ATTTGAAAAGCACACCGATTACAGTCTGTGGAAGCGGGGCAACTTCAACTTCAGTTGCACTTCAGGTTTGAGACCACCAA
ATTTCAGGGTTTTTGCAGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MQTQASTCRRRPRSGSGGLGDDLDDARAMVSQSAAAPRGRLRVSVPAHHLLLPLLPEFLERHPQVELDIDFNVRIVDLIG
EGVDIAIRSGDLPDSRLRSQPLRHYRSLLCASPDYLARRGPPATVGDLADHDGIAFRYPNSGQWLPWPLPGTGGATVPEE
PPPPLSMSSAPSPSPLPRLRRVLGFNNMEAVRGAALGGLGIGCMPDFLLEGPLREGALRQVLPDPEGRPAGRFRAVWPTS
RQLSPKVRVFVDFLRGRLGDRQETIKSMA

Sequences:

>Translated_269_residues
MQTQASTCRRRPRSGSGGLGDDLDDARAMVSQSAAAPRGRLRVSVPAHHLLLPLLPEFLERHPQVELDIDFNVRIVDLIG
EGVDIAIRSGDLPDSRLRSQPLRHYRSLLCASPDYLARRGPPATVGDLADHDGIAFRYPNSGQWLPWPLPGTGGATVPEE
PPPPLSMSSAPSPSPLPRLRRVLGFNNMEAVRGAALGGLGIGCMPDFLLEGPLREGALRQVLPDPEGRPAGRFRAVWPTS
RQLSPKVRVFVDFLRGRLGDRQETIKSMA
>Mature_269_residues
MQTQASTCRRRPRSGSGGLGDDLDDARAMVSQSAAAPRGRLRVSVPAHHLLLPLLPEFLERHPQVELDIDFNVRIVDLIG
EGVDIAIRSGDLPDSRLRSQPLRHYRSLLCASPDYLARRGPPATVGDLADHDGIAFRYPNSGQWLPWPLPGTGGATVPEE
PPPPLSMSSAPSPSPLPRLRRVLGFNNMEAVRGAALGGLGIGCMPDFLLEGPLREGALRQVLPDPEGRPAGRFRAVWPTS
RQLSPKVRVFVDFLRGRLGDRQETIKSMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=236, Percent_Identity=30.9322033898305, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI145693193, Length=244, Percent_Identity=31.1475409836066, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787589, Length=249, Percent_Identity=25.7028112449799, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081978, Length=258, Percent_Identity=28.6821705426357, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 29285; Mature: 29285

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTQASTCRRRPRSGSGGLGDDLDDARAMVSQSAAAPRGRLRVSVPAHHLLLPLLPEFLE
CCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHH
RHPQVELDIDFNVRIVDLIGEGVDIAIRSGDLPDSRLRSQPLRHYRSLLCASPDYLARRG
HCCCEEEEECCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCC
PPATVGDLADHDGIAFRYPNSGQWLPWPLPGTGGATVPEEPPPPLSMSSAPSPSPLPRLR
CCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
RVLGFNNMEAVRGAALGGLGIGCMPDFLLEGPLREGALRQVLPDPEGRPAGRFRAVWPTS
HHHCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCC
RQLSPKVRVFVDFLRGRLGDRQETIKSMA
CCCCHHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MQTQASTCRRRPRSGSGGLGDDLDDARAMVSQSAAAPRGRLRVSVPAHHLLLPLLPEFLE
CCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHH
RHPQVELDIDFNVRIVDLIGEGVDIAIRSGDLPDSRLRSQPLRHYRSLLCASPDYLARRG
HCCCEEEEECCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCC
PPATVGDLADHDGIAFRYPNSGQWLPWPLPGTGGATVPEEPPPPLSMSSAPSPSPLPRLR
CCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
RVLGFNNMEAVRGAALGGLGIGCMPDFLLEGPLREGALRQVLPDPEGRPAGRFRAVWPTS
HHHCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCC
RQLSPKVRVFVDFLRGRLGDRQETIKSMA
CCCCHHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]