Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120611043
Identifier: 120611043
GI number: 120611043
Start: 2586379
End: 2588388
Strand: Direct
Name: 120611043
Synonym: Aave_2372
Alternate gene names: NA
Gene position: 2586379-2588388 (Clockwise)
Preceding gene: 120611042
Following gene: 120611044
Centisome position: 48.32
GC content: 67.91
Gene sequence:
>2010_bases ATGCCCCAGCTCTACCTGAACAACTTCACCACGCAATTCATCGCGTCCGTCAAGGCCGCGCCGGCCACCGCCAACCCGGC GGGCGAACTGGACTACGGCGTGCTCCGAGTCTCCGACGGCGCCGCCGGCACGCTCATCAACCCGCCGGGTGGCAGCTGGT ATGTGCTGACCGCCTTCAAGCGCGCCGGCACCGTGGAATCGGACTACGAGATCCTGCGCGTCACCGGGGTGGACAACTCT GTGGTGGGCGAGTGCCGGCTGACCGTGCTGCGCGGGCAGGAGGGCACCACGCCGCGGGCCTACGTGGCCGGCGACCTGGT GGAGCTGCGCCTGACGGCCGGCGGGATCAGCCAGTACGCCCAGACCACCGACCCGCGCATGTCCGATCCGCGCACGCCCA CCGGCGCCGCGGGCGGCGTGCTGTCGGGAAACTACCCGAACCCGGGCTTCGCCCAGCCCATGGCGACGGTGGCCCAGATG GAGGGTCGCGTGGAGAAGGTGGCGGGCAAGGGCCTGAGCACCAACGACTACACCACCGCCGACCTCGCCAAGCTCGCCGG CATTGCCGAACAGGCCACGAAGAACGCACCGGACTCGCAGTTGCGCGATCGCAGTACCCACACTGGCACGCAGCCCATGG CCACGGTGATGGGGTTGCCGGAAACGCTCGCCACGAAGGTGGACGTGGTGGCCGGCAAGGGGCTGAGCGCGGAGGATTTC TCGACCGCCGAGAAGGTGAAGCTGGCGGGCGTGCAGCCCGGGGCCCAGGTCAACGCGGTGCTGTCCGTGGCGGGCCGCAG CGGCAACGTGGTGCTTCTGCCCGGCGATGTCGGCTTGGGGAGCGTGGACAACACGGCCGACGCGGCGAAGCCCGTCAGCG TGCTCCAGGCTGCCGCGATCGCCGCGCGGCTCAACCGGACCGGCGACCAGATGACCGGCGACCTGGCGCTGAAGACCCTC AACGGCAGTCACCTCGCGGGGACGCGAAACCGCCTCATCAACGGACGTTGCAATGTGGCGCAACGTGGTACGAGCTTCCC TGGTGCGTCCATCAGCACGGGAAACTATCCGGTGGATCGGCTCGCGTTCACCGGGTCCTACACCCCGGCCGTGGCTACGG TGGAGCAGGCCACCGACGGCCCGGCTCTCGATCCTGGCTTGCGCCGGTGCGCGCGGCTGACCGTGACGACGGCAGATCCC GCGATGGAAGGGGGCGACTCCGCAGGGCTCCAGCAGATCATCGAGGGCTACAACATCGCCGACCTCTTCGGCGTCACCTT CACCGTGTCGTTCTGGGTGCGCTCCTCTCGGGTGGGGGTTCACTGCCTCGCGCTCTTCAACGGCGGGTTCGATAAGTCGT TCGTGGCGGAATACTCGGTCCAAAATGCGAACACCTGGGAGTTCAAGTCCGTCACCCTGGTGGGCGGGTTGCCGGCCGCG GGCGGCTGGAACACGTCCTGGGGTCCGGGGCTTTATGTTCGCTGGTGCGTGGGCGTGGGCCCGACCTACCACACCCAGCC GGGCGCATGGCGCGATGGGCTGTACCTCGGCACATCCAGTCAGGTGAATTGCCTGGACACCGCGGGCAACGTCTTCGCCC TGACCGGCTTCCGGCTGGAGTCGGGGGCGGTGGCCACGCCGTTCGAACACCGGCAAATCGGCGACGAGATGGACGACTGC CTGCGGTACTTCGAGCAGCTGAACAACGCCAATGCCAATGTGTACGCGATGGGCATGGTTCCCAACAATTCCCAGGTGTG GGCACTGCTGGAGTACGACACGAAGCGAGTGGCGCCGAGCCTGAGTTTTCCCGGCAGCGTGGCCAACTTCCAATTCCAGA TCGGGAGCGGGACGCCCTCGTGCACCGATCGACCCTACGCAAATTCCGCCGGCACGAAGCGTGCCCACATCGTGCTCACC AGCACCAGCGCCGGCCTGGCGGGCGATAGCAAGGCGTGCCTGTGCGTCCTGGCGGGCGATGCGCGGATCAACATCAACGC GGAGTTCTGA
Upstream 100 bases:
>100_bases GGCAAGAGCGGCACGAAGTACCAGATTTCCATCGCGGCGACCACCAACGACGGCCGCGTCAAGGAGGTGGAACTGGTCGT ACCCATCAAGGAGCAGTGAC
Downstream 100 bases:
>100_bases TGCCATACCGACTCACGGCGGGGGACATGATCTTCCGCATTGCCGATGAAGTTTCGTTCCCGCCCGTGCGGGGCAATGCC GACTACGAGATTTACCTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 669; Mature: 668
Protein sequence:
>669_residues MPQLYLNNFTTQFIASVKAAPATANPAGELDYGVLRVSDGAAGTLINPPGGSWYVLTAFKRAGTVESDYEILRVTGVDNS VVGECRLTVLRGQEGTTPRAYVAGDLVELRLTAGGISQYAQTTDPRMSDPRTPTGAAGGVLSGNYPNPGFAQPMATVAQM EGRVEKVAGKGLSTNDYTTADLAKLAGIAEQATKNAPDSQLRDRSTHTGTQPMATVMGLPETLATKVDVVAGKGLSAEDF STAEKVKLAGVQPGAQVNAVLSVAGRSGNVVLLPGDVGLGSVDNTADAAKPVSVLQAAAIAARLNRTGDQMTGDLALKTL NGSHLAGTRNRLINGRCNVAQRGTSFPGASISTGNYPVDRLAFTGSYTPAVATVEQATDGPALDPGLRRCARLTVTTADP AMEGGDSAGLQQIIEGYNIADLFGVTFTVSFWVRSSRVGVHCLALFNGGFDKSFVAEYSVQNANTWEFKSVTLVGGLPAA GGWNTSWGPGLYVRWCVGVGPTYHTQPGAWRDGLYLGTSSQVNCLDTAGNVFALTGFRLESGAVATPFEHRQIGDEMDDC LRYFEQLNNANANVYAMGMVPNNSQVWALLEYDTKRVAPSLSFPGSVANFQFQIGSGTPSCTDRPYANSAGTKRAHIVLT STSAGLAGDSKACLCVLAGDARININAEF
Sequences:
>Translated_669_residues MPQLYLNNFTTQFIASVKAAPATANPAGELDYGVLRVSDGAAGTLINPPGGSWYVLTAFKRAGTVESDYEILRVTGVDNS VVGECRLTVLRGQEGTTPRAYVAGDLVELRLTAGGISQYAQTTDPRMSDPRTPTGAAGGVLSGNYPNPGFAQPMATVAQM EGRVEKVAGKGLSTNDYTTADLAKLAGIAEQATKNAPDSQLRDRSTHTGTQPMATVMGLPETLATKVDVVAGKGLSAEDF STAEKVKLAGVQPGAQVNAVLSVAGRSGNVVLLPGDVGLGSVDNTADAAKPVSVLQAAAIAARLNRTGDQMTGDLALKTL NGSHLAGTRNRLINGRCNVAQRGTSFPGASISTGNYPVDRLAFTGSYTPAVATVEQATDGPALDPGLRRCARLTVTTADP AMEGGDSAGLQQIIEGYNIADLFGVTFTVSFWVRSSRVGVHCLALFNGGFDKSFVAEYSVQNANTWEFKSVTLVGGLPAA GGWNTSWGPGLYVRWCVGVGPTYHTQPGAWRDGLYLGTSSQVNCLDTAGNVFALTGFRLESGAVATPFEHRQIGDEMDDC LRYFEQLNNANANVYAMGMVPNNSQVWALLEYDTKRVAPSLSFPGSVANFQFQIGSGTPSCTDRPYANSAGTKRAHIVLT STSAGLAGDSKACLCVLAGDARININAEF >Mature_668_residues PQLYLNNFTTQFIASVKAAPATANPAGELDYGVLRVSDGAAGTLINPPGGSWYVLTAFKRAGTVESDYEILRVTGVDNSV VGECRLTVLRGQEGTTPRAYVAGDLVELRLTAGGISQYAQTTDPRMSDPRTPTGAAGGVLSGNYPNPGFAQPMATVAQME GRVEKVAGKGLSTNDYTTADLAKLAGIAEQATKNAPDSQLRDRSTHTGTQPMATVMGLPETLATKVDVVAGKGLSAEDFS TAEKVKLAGVQPGAQVNAVLSVAGRSGNVVLLPGDVGLGSVDNTADAAKPVSVLQAAAIAARLNRTGDQMTGDLALKTLN GSHLAGTRNRLINGRCNVAQRGTSFPGASISTGNYPVDRLAFTGSYTPAVATVEQATDGPALDPGLRRCARLTVTTADPA MEGGDSAGLQQIIEGYNIADLFGVTFTVSFWVRSSRVGVHCLALFNGGFDKSFVAEYSVQNANTWEFKSVTLVGGLPAAG GWNTSWGPGLYVRWCVGVGPTYHTQPGAWRDGLYLGTSSQVNCLDTAGNVFALTGFRLESGAVATPFEHRQIGDEMDDCL RYFEQLNNANANVYAMGMVPNNSQVWALLEYDTKRVAPSLSFPGSVANFQFQIGSGTPSCTDRPYANSAGTKRAHIVLTS TSAGLAGDSKACLCVLAGDARININAEF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69926; Mature: 69795
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQLYLNNFTTQFIASVKAAPATANPAGELDYGVLRVSDGAAGTLINPPGGSWYVLTAFK CCCEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCEEEEEEEH RAGTVESDYEILRVTGVDNSVVGECRLTVLRGQEGTTPRAYVAGDLVELRLTAGGISQYA HCCCCCCCCEEEEEECCCCCEECEEEEEEEECCCCCCCCEEEECCEEEEEEECCCHHHHH QTTDPRMSDPRTPTGAAGGVLSGNYPNPGFAQPMATVAQMEGRVEKVAGKGLSTNDYTTA HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH DLAKLAGIAEQATKNAPDSQLRDRSTHTGTQPMATVMGLPETLATKVDVVAGKGLSAEDF HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHCCCHHHHHEEEEEECCCCCCCCC STAEKVKLAGVQPGAQVNAVLSVAGRSGNVVLLPGDVGLGSVDNTADAAKPVSVLQAAAI CCHHHEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH AARLNRTGDQMTGDLALKTLNGSHLAGTRNRLINGRCNVAQRGTSFPGASISTGNYPVDR HHHHHCCCCCCCCEEEEEEECCCCCCCCHHHEECCCCCHHHCCCCCCCCCCCCCCCCHHH LAFTGSYTPAVATVEQATDGPALDPGLRRCARLTVTTADPAMEGGDSAGLQQIIEGYNIA EEEECCCCCCEEEHHHCCCCCCCCHHHHHHEEEEEEECCCCCCCCCHHHHHHHHCCCCHH DLFGVTFTVSFWVRSSRVGVHCLALFNGGFDKSFVAEYSVQNANTWEFKSVTLVGGLPAA HHHHEEEEEEEEEECCCCCEEEEEEECCCCCCCHHEEEECCCCCCEEEEEEEEECCCCCC GGWNTSWGPGLYVRWCVGVGPTYHTQPGAWRDGLYLGTSSQVNCLDTAGNVFALTGFRLE CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEEEEEEEC SGAVATPFEHRQIGDEMDDCLRYFEQLNNANANVYAMGMVPNNSQVWALLEYDTKRVAPS CCCEECCHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCHHCCCC LSFPGSVANFQFQIGSGTPSCTDRPYANSAGTKRAHIVLTSTSAGLAGDSKACLCVLAGD CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECC ARININAEF EEEEEEECC >Mature Secondary Structure PQLYLNNFTTQFIASVKAAPATANPAGELDYGVLRVSDGAAGTLINPPGGSWYVLTAFK CCEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCEEEEEEEH RAGTVESDYEILRVTGVDNSVVGECRLTVLRGQEGTTPRAYVAGDLVELRLTAGGISQYA HCCCCCCCCEEEEEECCCCCEECEEEEEEEECCCCCCCCEEEECCEEEEEEECCCHHHHH QTTDPRMSDPRTPTGAAGGVLSGNYPNPGFAQPMATVAQMEGRVEKVAGKGLSTNDYTTA HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH DLAKLAGIAEQATKNAPDSQLRDRSTHTGTQPMATVMGLPETLATKVDVVAGKGLSAEDF HHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHCCCHHHHHEEEEEECCCCCCCCC STAEKVKLAGVQPGAQVNAVLSVAGRSGNVVLLPGDVGLGSVDNTADAAKPVSVLQAAAI CCHHHEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH AARLNRTGDQMTGDLALKTLNGSHLAGTRNRLINGRCNVAQRGTSFPGASISTGNYPVDR HHHHHCCCCCCCCEEEEEEECCCCCCCCHHHEECCCCCHHHCCCCCCCCCCCCCCCCHHH LAFTGSYTPAVATVEQATDGPALDPGLRRCARLTVTTADPAMEGGDSAGLQQIIEGYNIA EEEECCCCCCEEEHHHCCCCCCCCHHHHHHEEEEEEECCCCCCCCCHHHHHHHHCCCCHH DLFGVTFTVSFWVRSSRVGVHCLALFNGGFDKSFVAEYSVQNANTWEFKSVTLVGGLPAA HHHHEEEEEEEEEECCCCCEEEEEEECCCCCCCHHEEEECCCCCCEEEEEEEEECCCCCC GGWNTSWGPGLYVRWCVGVGPTYHTQPGAWRDGLYLGTSSQVNCLDTAGNVFALTGFRLE CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEEEEEEEC SGAVATPFEHRQIGDEMDDCLRYFEQLNNANANVYAMGMVPNNSQVWALLEYDTKRVAPS CCCEECCHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCHHCCCC LSFPGSVANFQFQIGSGTPSCTDRPYANSAGTKRAHIVLTSTSAGLAGDSKACLCVLAGD CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECC ARININAEF EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA