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The map label for this gene is ygiD [H]

Identifier: 120610978

GI number: 120610978

Start: 2532425

End: 2533294

Strand: Direct

Name: ygiD [H]

Synonym: Aave_2305

Alternate gene names: 120610978

Gene position: 2532425-2533294 (Clockwise)

Preceding gene: 120610977

Following gene: 120610979

Centisome position: 47.31

GC content: 72.99

Gene sequence:

>870_bases
ATGTCTTCGACCGCACCGCTCTCCGCCACGCCTTCTTCTTCCCCTGTGCCCGTCACTGCGCCGGGGCGCGAAGTGCCCGC
GCTGTTCGTTTCCCACGGCTCGCCCATGTTCGCCCTGGAAGCAGGGGAGACCGGCCCGGCGCTGCGTGCCTGGGCGGACG
GGTTGCGCCGGCGCTTTCCCGCGCTGCGCGGGGTGGTGGTGATGTCGCCGCACTGGATGGCCCGCGGCGTGCGCGTCATG
ACCGGCGCGCAGCCGGCCACCTGGCATGATTTCGGAGGCTTCCCGGAGCCGCTCTATGCGCTGCGCTATCCGGCATCCGG
CGCCCCCGGCCTGGCCGGGGAAGTCCTCTCGCTACTGCAGGCCGCCGGCTTCGACGCCCAGGGTGACGCGCAGCGGCCCT
TCGACCATGGCGCCTGGGTGCCGCTGATGCACCTCTTTCCAGATGCCGATCTGTCGGTGGTGCAGGTCGCGCTGCCCGCC
GGTGCGGGCCCGCGCGAGGTGTACGACCTGGGTACGGCGCTGCGCGGCCTGCGCGCGCAGGGCGTCCTGGTGATGGGCTC
CGGCAGCATGACGCACAACCTCTCCGAGTTCTTCGGCGGCGCGCGCGGTGCGCAGCCCTATGTGGCCGAGTTCTCCCGGT
GGGTGGAAAGCGCGCTGCAGCGAGGCGACGTGGAGGAACTGCTGGAGTACCGCAGCCGGGCCCCGCACGCCGTGCGCGCG
CATCCCGGCGACGACCATTTCCTGCCGCTGTTCTTCGCGCTCGGCGCGGCCGGCGAACACCGCGCGCCGGCCTACCTGAG
CCGGGAGGTGATGCATGGCTCGCTGGCCATGGACGCCTTCGCCCTCGGGCCCGGCGCCGCGGCCGCGTGA

Upstream 100 bases:

>100_bases
TGCCGCGCGGGCCTTGGGTTCGTGGCTGCGCGCGCATACATTCGGACAGGGCACTGTCCCGCGCCATCTTCCGTTGTCCT
GCCACGCCGACCGGGCCGCC

Downstream 100 bases:

>100_bases
AACTCCGGGACGGCCAGCCGCTCCAAGTCCCGATGACCCAGTCCACTTCCTTCGCGCCGCCCCCCCTGCTGGATTTGCCG
CTCGCCTTTCTCGGCCGCCG

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MSSTAPLSATPSSSPVPVTAPGREVPALFVSHGSPMFALEAGETGPALRAWADGLRRRFPALRGVVVMSPHWMARGVRVM
TGAQPATWHDFGGFPEPLYALRYPASGAPGLAGEVLSLLQAAGFDAQGDAQRPFDHGAWVPLMHLFPDADLSVVQVALPA
GAGPREVYDLGTALRGLRAQGVLVMGSGSMTHNLSEFFGGARGAQPYVAEFSRWVESALQRGDVEELLEYRSRAPHAVRA
HPGDDHFLPLFFALGAAGEHRAPAYLSREVMHGSLAMDAFALGPGAAAA

Sequences:

>Translated_289_residues
MSSTAPLSATPSSSPVPVTAPGREVPALFVSHGSPMFALEAGETGPALRAWADGLRRRFPALRGVVVMSPHWMARGVRVM
TGAQPATWHDFGGFPEPLYALRYPASGAPGLAGEVLSLLQAAGFDAQGDAQRPFDHGAWVPLMHLFPDADLSVVQVALPA
GAGPREVYDLGTALRGLRAQGVLVMGSGSMTHNLSEFFGGARGAQPYVAEFSRWVESALQRGDVEELLEYRSRAPHAVRA
HPGDDHFLPLFFALGAAGEHRAPAYLSREVMHGSLAMDAFALGPGAAAA
>Mature_288_residues
SSTAPLSATPSSSPVPVTAPGREVPALFVSHGSPMFALEAGETGPALRAWADGLRRRFPALRGVVVMSPHWMARGVRVMT
GAQPATWHDFGGFPEPLYALRYPASGAPGLAGEVLSLLQAAGFDAQGDAQRPFDHGAWVPLMHLFPDADLSVVQVALPAG
AGPREVYDLGTALRGLRAQGVLVMGSGSMTHNLSEFFGGARGAQPYVAEFSRWVESALQRGDVEELLEYRSRAPHAVRAH
PGDDHFLPLFFALGAAGEHRAPAYLSREVMHGSLAMDAFALGPGAAAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=263, Percent_Identity=33.8403041825095, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 30439; Mature: 30308

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTAPLSATPSSSPVPVTAPGREVPALFVSHGSPMFALEAGETGPALRAWADGLRRRFP
CCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHH
ALRGVVVMSPHWMARGVRVMTGAQPATWHDFGGFPEPLYALRYPASGAPGLAGEVLSLLQ
HHCCEEEECCHHHHCCEEEEECCCCCCCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHHH
AAGFDAQGDAQRPFDHGAWVPLMHLFPDADLSVVQVALPAGAGPREVYDLGTALRGLRAQ
HCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHC
GVLVMGSGSMTHNLSEFFGGARGAQPYVAEFSRWVESALQRGDVEELLEYRSRAPHAVRA
CEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEC
HPGDDHFLPLFFALGAAGEHRAPAYLSREVMHGSLAMDAFALGPGAAAA
CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SSTAPLSATPSSSPVPVTAPGREVPALFVSHGSPMFALEAGETGPALRAWADGLRRRFP
CCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHH
ALRGVVVMSPHWMARGVRVMTGAQPATWHDFGGFPEPLYALRYPASGAPGLAGEVLSLLQ
HHCCEEEECCHHHHCCEEEEECCCCCCCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHHH
AAGFDAQGDAQRPFDHGAWVPLMHLFPDADLSVVQVALPAGAGPREVYDLGTALRGLRAQ
HCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHC
GVLVMGSGSMTHNLSEFFGGARGAQPYVAEFSRWVESALQRGDVEELLEYRSRAPHAVRA
CEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEC
HPGDDHFLPLFFALGAAGEHRAPAYLSREVMHGSLAMDAFALGPGAAAA
CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]