Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yrhP [H]
Identifier: 120610940
GI number: 120610940
Start: 2497356
End: 2497991
Strand: Direct
Name: yrhP [H]
Synonym: Aave_2266
Alternate gene names: 120610940
Gene position: 2497356-2497991 (Clockwise)
Preceding gene: 120610939
Following gene: 120610944
Centisome position: 46.66
GC content: 72.96
Gene sequence:
>636_bases ATGCCCGCCGCCGCCCAGCTTCTCGCATTCCTGATCGCCGCCGTTCTCATCACCGCCACGCCCGGGCCGGACAACCTCAT GGTGCTGGGCATGGGCATGTCGAGGGGCCGGGCGCGGGGCGTGGCCTTCGGGCTCGGCTGCGCCGCGGGCTGCCTGAGCC ATACGCTGCTCGCGGTGCTCGGCGTGAGCGCGATGATCGCGGCCTCCCCCGTTGCGTTCACCGTGCTCAAGTGGGTGGGC GGCGCCTACCTCGTGTGGCTCGGCGTGCAGGCCCTGCGCCACGCCGGCAGCGGCGGCACCGTGCGCACCGACGTGGCCGG GCAGGCCGCCCAGCCGCTGCGCGTCCTGTTCGCCAGGGGCATGCTGGCGAATGCGGTCAATCCGAAGGTCGTGCTGTTCT TCCTCTCGTTCCTGCCGCAGTTCGTGGTGCCCTCGCAGGGCGCGGTGGGGCTGCAGCTGGGCGTGCTGGGGCTGGTGTTC ACGCTGCAGGCAGCGTTGCTCTTCGGCCTGCTGGGCTGCTTCGCGGGCACGATTGGCCACTGGCTGCAGCGGCGGCCGCG CGCCGGCCTGTGGCTGGACCGCATCGCGGGCACGGTGTTCATCGCGCTGGGCCTGCGCATGGTGGCGGCGCGCTGA
Upstream 100 bases:
>100_bases TTGTTAAAAATTACTGGAATATCGATAGGGCGACCGCAAGGTCTCCAAGTCTGGGAAAAGCCTTTTTAAGGCTTAATTCA ATGCTCGCGAAATAGTTTGT
Downstream 100 bases:
>100_bases ACGCGGGCGCCCCGCTCAGGCGCGCGGCAGCGTGATGGTGACGGAGGTGCCCTGGCCGGGGCGGCTTTCCATGCGCACCT GGCCGCGGTTGGCTTCCACC
Product: lysine exporter protein LysE/YggA
Products: homoserine lactone [Periplasm]; Proton [Cytoplasm]; homoserine [Periplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MPAAAQLLAFLIAAVLITATPGPDNLMVLGMGMSRGRARGVAFGLGCAAGCLSHTLLAVLGVSAMIAASPVAFTVLKWVG GAYLVWLGVQALRHAGSGGTVRTDVAGQAAQPLRVLFARGMLANAVNPKVVLFFLSFLPQFVVPSQGAVGLQLGVLGLVF TLQAALLFGLLGCFAGTIGHWLQRRPRAGLWLDRIAGTVFIALGLRMVAAR
Sequences:
>Translated_211_residues MPAAAQLLAFLIAAVLITATPGPDNLMVLGMGMSRGRARGVAFGLGCAAGCLSHTLLAVLGVSAMIAASPVAFTVLKWVG GAYLVWLGVQALRHAGSGGTVRTDVAGQAAQPLRVLFARGMLANAVNPKVVLFFLSFLPQFVVPSQGAVGLQLGVLGLVF TLQAALLFGLLGCFAGTIGHWLQRRPRAGLWLDRIAGTVFIALGLRMVAAR >Mature_210_residues PAAAQLLAFLIAAVLITATPGPDNLMVLGMGMSRGRARGVAFGLGCAAGCLSHTLLAVLGVSAMIAASPVAFTVLKWVGG AYLVWLGVQALRHAGSGGTVRTDVAGQAAQPLRVLFARGMLANAVNPKVVLFFLSFLPQFVVPSQGAVGLQLGVLGLVFT LQAALLFGLLGCFAGTIGHWLQRRPRAGLWLDRIAGTVFIALGLRMVAAR
Specific function: Conducts The Efflux Of Homoserine And Homoserine Lactone. [C]
COG id: COG1280
COG function: function code E; Putative threonine efflux protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the rht family [H]
Homologues:
Organism=Escherichia coli, GI48994979, Length=205, Percent_Identity=30.2439024390244, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788099, Length=201, Percent_Identity=23.8805970149254, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1786522, Length=117, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI48994978, Length=212, Percent_Identity=26.8867924528302, Blast_Score=63, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004778 - InterPro: IPR001123 [H]
Pfam domain/function: PF01810 LysE [H]
EC number: NA
Molecular weight: Translated: 21787; Mature: 21655
Theoretical pI: Translated: 12.31; Mature: 12.31
Prosite motif: PS01076 ACETATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAAAQLLAFLIAAVLITATPGPDNLMVLGMGMSRGRARGVAFGLGCAAGCLSHTLLAVL CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH GVSAMIAASPVAFTVLKWVGGAYLVWLGVQALRHAGSGGTVRTDVAGQAAQPLRVLFARG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHH MLANAVNPKVVLFFLSFLPQFVVPSQGAVGLQLGVLGLVFTLQAALLFGLLGCFAGTIGH HHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLQRRPRAGLWLDRIAGTVFIALGLRMVAAR HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PAAAQLLAFLIAAVLITATPGPDNLMVLGMGMSRGRARGVAFGLGCAAGCLSHTLLAVL CHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH GVSAMIAASPVAFTVLKWVGGAYLVWLGVQALRHAGSGGTVRTDVAGQAAQPLRVLFARG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHH MLANAVNPKVVLFFLSFLPQFVVPSQGAVGLQLGVLGLVFTLQAALLFGLLGCFAGTIGH HHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLQRRPRAGLWLDRIAGTVFIALGLRMVAAR HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; homoserine [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + homoserine lactone [Cytoplasm] = Proton [Cytoplasm] + homoserine lactone [Periplasm] Proton [Periplasm] + homoserine [Cytoplasm] = Proton [Cytoplasm] + homoserine [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377; 9308178 [H]