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The map label for this gene is ybcK [H]

Identifier: 120610327

GI number: 120610327

Start: 1801168

End: 1802820

Strand: Reverse

Name: ybcK [H]

Synonym: Aave_1644

Alternate gene names: 120610327

Gene position: 1802820-1801168 (Counterclockwise)

Preceding gene: 120610330

Following gene: 120610326

Centisome position: 33.68

GC content: 65.28

Gene sequence:

>1653_bases
TTGAAAGGTCTTGTCTACAGCTACATGCGGTTTTCAGATCCGCGCCAGGCCGCTGGCCACAGCCGCGAGCGCCAGGAGGC
GTACGCGGCGAAATGGGCAGCAGAGCACGGGCTGCAGCTTGACGACACGCTCACGATGCTGGACGAGGGGCTGTCGGCCT
ACCACCAGCGGCACGTGAAATCGGGGGCGCTGGGGGCGTTCCTGGCAGGTGTCGAGGCCGGGCGGATCTCAGCGGGATCG
GTGCTTGTCGTCGAGGGGCTAGACCGGCTCTCTCGCGCCGAGCCGATCCAGGCCCAGGCGCAACTGGCCCAGATTGTAAA
TGCCGGCATCACTGTGGTCACTGCCAGCGACGGGAAGGTCTACAGCCGAGAGCGGCTAAAGGACAACCCCATGGACCTGG
TCTACAGCCTCCTGGTCATGATCCGCGCGCACGAAGAGAGCGACACGAAGAGCAAGCGGGTGAAAGCGAGTATTCGGCGC
CTGTGCGAAGGATGGCGAGCCGGCACCTACCGTGGCCGAGTGCGACAGGGGCACGATCCGGACTGGCTTCACGAAACCCC
GGAAGGCTGGGAAGTGGTGCCGGAGCGCGTGAATGCGGTGCGACGTGCCATTGAGCTCTACGTGCAAGGGCACGGGGGCA
AGCGGATCGTAGAGACGCTGGATGCGGAGGGCCTGCAGCTATACAGCACGAGCGACGCGAATCACTCTTCCCAGGTGTAC
CGCCTGGTCAAACTGCCGCAGCTGGCTGGGGTCAAGCCCGTATCAGTGGACGGAGAGGATTACATGCTTGAGGGCTACTA
CCCCGCCATCCTGAGCCAGGCCGAGTATGACGAGCTACGCCGGGTCGGCACACACAGCGGCCGCCGGCGGACGCAGGGCG
ATCTACCGCATGTAATCACCGGACTCGGCATCACCGTGTGCGGGTACTGCGGCCGCCCGATGGCGGGGCAGAACCTGGCC
ACCAAGAAACGCCTGCCAGACGGGCGCATCCGTGACGGCTACCGGCGCCTGTTGTGCCAATCCAATGCAGCCTACGGCGG
CGGCTGCGCGGTGCAGGCCAGCACCAGCGTGGCCCCAGTGGAGCGCGCCCTCATGGCGTATTGCAGCGACATCATGAACC
TGCAGGCACTTTTCGGCGTAGACCGGACCGAAGGACCGCGCGCTCAGGTATCGGCGGCCAAGGCCAAGGTGGAGGATCTC
AATGCCCAGCTCGAGCGGGTGACGGACGCCATGTTGGCCAGCGCTGCCGAAGGTACGCCCCAGGTTTTCGCCCGGCGCGC
ACGCGCGCTCGAGACGGAACTCCAGGACGCAGAGAAAGCACTGCGCCAAGCCGAGCATGAGCTGGCAGGAGTAGCGCGAA
AGAACGTGCAGGGCGCGGAAGAAGCCTGGCAGCAGCTTGCCGGAGGTGTCGAGGCCCAGGACGTGGCCGCCCGCCTTCGG
GCTCGCCAGTTGGTCGCGGACACCTTCGAGCGCATCGTCGTTTACGCCCGAGGCATGCGCCCTGATCCCGCCGCTGGTGA
ACGGGACTACTGCATTGATCTGATCCTCGTCGGGCGCGGCGGAAATTCTCGGCTACTGAGGATCGACAGAGCGGGCAATC
TGCTTCAGGCTGAGGACGTTTCTCAGGCAGAGGATGTGGTGGTGCCTGGTTGA

Upstream 100 bases:

>100_bases
GAGTTCGGAATCCGTGAGGGCCTTCGGGCACCCGAGGGATACCATACCTATACGCGGCAGGCGGGCCGGTGCAATCGTTT
CGTTCATGGGGGAATGTGTC

Downstream 100 bases:

>100_bases
TCGCTGCCAGACACTTCACCCGGCGGTCCAGTGACTGTATATTTATACAGCATCACTGGAGCCAGCCCATGCCCGCCCAT
CACCTCTACACGGTCGCCTT

Product: recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MKGLVYSYMRFSDPRQAAGHSRERQEAYAAKWAAEHGLQLDDTLTMLDEGLSAYHQRHVKSGALGAFLAGVEAGRISAGS
VLVVEGLDRLSRAEPIQAQAQLAQIVNAGITVVTASDGKVYSRERLKDNPMDLVYSLLVMIRAHEESDTKSKRVKASIRR
LCEGWRAGTYRGRVRQGHDPDWLHETPEGWEVVPERVNAVRRAIELYVQGHGGKRIVETLDAEGLQLYSTSDANHSSQVY
RLVKLPQLAGVKPVSVDGEDYMLEGYYPAILSQAEYDELRRVGTHSGRRRTQGDLPHVITGLGITVCGYCGRPMAGQNLA
TKKRLPDGRIRDGYRRLLCQSNAAYGGGCAVQASTSVAPVERALMAYCSDIMNLQALFGVDRTEGPRAQVSAAKAKVEDL
NAQLERVTDAMLASAAEGTPQVFARRARALETELQDAEKALRQAEHELAGVARKNVQGAEEAWQQLAGGVEAQDVAARLR
ARQLVADTFERIVVYARGMRPDPAAGERDYCIDLILVGRGGNSRLLRIDRAGNLLQAEDVSQAEDVVVPG

Sequences:

>Translated_550_residues
MKGLVYSYMRFSDPRQAAGHSRERQEAYAAKWAAEHGLQLDDTLTMLDEGLSAYHQRHVKSGALGAFLAGVEAGRISAGS
VLVVEGLDRLSRAEPIQAQAQLAQIVNAGITVVTASDGKVYSRERLKDNPMDLVYSLLVMIRAHEESDTKSKRVKASIRR
LCEGWRAGTYRGRVRQGHDPDWLHETPEGWEVVPERVNAVRRAIELYVQGHGGKRIVETLDAEGLQLYSTSDANHSSQVY
RLVKLPQLAGVKPVSVDGEDYMLEGYYPAILSQAEYDELRRVGTHSGRRRTQGDLPHVITGLGITVCGYCGRPMAGQNLA
TKKRLPDGRIRDGYRRLLCQSNAAYGGGCAVQASTSVAPVERALMAYCSDIMNLQALFGVDRTEGPRAQVSAAKAKVEDL
NAQLERVTDAMLASAAEGTPQVFARRARALETELQDAEKALRQAEHELAGVARKNVQGAEEAWQQLAGGVEAQDVAARLR
ARQLVADTFERIVVYARGMRPDPAAGERDYCIDLILVGRGGNSRLLRIDRAGNLLQAEDVSQAEDVVVPG
>Mature_550_residues
MKGLVYSYMRFSDPRQAAGHSRERQEAYAAKWAAEHGLQLDDTLTMLDEGLSAYHQRHVKSGALGAFLAGVEAGRISAGS
VLVVEGLDRLSRAEPIQAQAQLAQIVNAGITVVTASDGKVYSRERLKDNPMDLVYSLLVMIRAHEESDTKSKRVKASIRR
LCEGWRAGTYRGRVRQGHDPDWLHETPEGWEVVPERVNAVRRAIELYVQGHGGKRIVETLDAEGLQLYSTSDANHSSQVY
RLVKLPQLAGVKPVSVDGEDYMLEGYYPAILSQAEYDELRRVGTHSGRRRTQGDLPHVITGLGITVCGYCGRPMAGQNLA
TKKRLPDGRIRDGYRRLLCQSNAAYGGGCAVQASTSVAPVERALMAYCSDIMNLQALFGVDRTEGPRAQVSAAKAKVEDL
NAQLERVTDAMLASAAEGTPQVFARRARALETELQDAEKALRQAEHELAGVARKNVQGAEEAWQQLAGGVEAQDVAARLR
ARQLVADTFERIVVYARGMRPDPAAGERDYCIDLILVGRGGNSRLLRIDRAGNLLQAEDVSQAEDVVVPG

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=502, Percent_Identity=26.4940239043825, Blast_Score=128, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 60179; Mature: 60179

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLVYSYMRFSDPRQAAGHSRERQEAYAAKWAAEHGLQLDDTLTMLDEGLSAYHQRHVK
CCCHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
SGALGAFLAGVEAGRISAGSVLVVEGLDRLSRAEPIQAQAQLAQIVNAGITVVTASDGKV
CCHHHHHHHHCCCCCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCC
YSRERLKDNPMDLVYSLLVMIRAHEESDTKSKRVKASIRRLCEGWRAGTYRGRVRQGHDP
HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DWLHETPEGWEVVPERVNAVRRAIELYVQGHGGKRIVETLDAEGLQLYSTSDANHSSQVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHH
RLVKLPQLAGVKPVSVDGEDYMLEGYYPAILSQAEYDELRRVGTHSGRRRTQGDLPHVIT
HHHHCHHHCCCCCEECCCCCEEECCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
GLGITVCGYCGRPMAGQNLATKKRLPDGRIRDGYRRLLCQSNAAYGGGCAVQASTSVAPV
HHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCHHHH
ERALMAYCSDIMNLQALFGVDRTEGPRAQVSAAKAKVEDLNAQLERVTDAMLASAAEGTP
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
QVFARRARALETELQDAEKALRQAEHELAGVARKNVQGAEEAWQQLAGGVEAQDVAARLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
ARQLVADTFERIVVYARGMRPDPAAGERDYCIDLILVGRGGNSRLLRIDRAGNLLQAEDV
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCEECCCCC
SQAEDVVVPG
CCCCCCCCCC
>Mature Secondary Structure
MKGLVYSYMRFSDPRQAAGHSRERQEAYAAKWAAEHGLQLDDTLTMLDEGLSAYHQRHVK
CCCHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
SGALGAFLAGVEAGRISAGSVLVVEGLDRLSRAEPIQAQAQLAQIVNAGITVVTASDGKV
CCHHHHHHHHCCCCCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCC
YSRERLKDNPMDLVYSLLVMIRAHEESDTKSKRVKASIRRLCEGWRAGTYRGRVRQGHDP
HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
DWLHETPEGWEVVPERVNAVRRAIELYVQGHGGKRIVETLDAEGLQLYSTSDANHSSQVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHH
RLVKLPQLAGVKPVSVDGEDYMLEGYYPAILSQAEYDELRRVGTHSGRRRTQGDLPHVIT
HHHHCHHHCCCCCEECCCCCEEECCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
GLGITVCGYCGRPMAGQNLATKKRLPDGRIRDGYRRLLCQSNAAYGGGCAVQASTSVAPV
HHHHHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCHHHH
ERALMAYCSDIMNLQALFGVDRTEGPRAQVSAAKAKVEDLNAQLERVTDAMLASAAEGTP
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
QVFARRARALETELQDAEKALRQAEHELAGVARKNVQGAEEAWQQLAGGVEAQDVAARLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
ARQLVADTFERIVVYARGMRPDPAAGERDYCIDLILVGRGGNSRLLRIDRAGNLLQAEDV
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCEECCCCC
SQAEDVVVPG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]