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The map label for this gene is ymfK [C]

Identifier: 120610290

GI number: 120610290

Start: 1769850

End: 1770515

Strand: Reverse

Name: ymfK [C]

Synonym: Aave_1607

Alternate gene names: 120610290

Gene position: 1770515-1769850 (Counterclockwise)

Preceding gene: 120610291

Following gene: 120610289

Centisome position: 33.08

GC content: 60.21

Gene sequence:

>666_bases
ATGGTTGAAGACTATTGGAGCCGACTGAAGCCTGCGATGGACGCGGCGAAGCTGAGCGCGCAGCAATTGGCTGACGCGAT
GGGCATCTCATACCAATCGGTCAAGAAGGTGCGTGACGGCGGCTCGTTCGGCATGGTGAACAATCTGAAGGCTGCAAAGC
TGCTGGGCCTGTCACCCGAGTGGCTCGCTACAGGCAAGGGCCAGCACCCGACCACCTCGAACGTGGCTGCAGGCCCAAAC
ATCAAAGGTAAAGGCCGCTATCCACTCATTTCCTGGGTGCAGGCGGGGGAGTGGACAGACATTTGCGATAACTTTCAGCC
AGGGGACGCCGACGAGTGGCCGCCCTCGCATCACAACTTGGGCGACTGCGGATACATGCTCCGGGTTCACGGGGATTCCA
TGACCGCGCCCGCAGGGTCCCCATACAGCTTCCCGGAGGGGGTGCTGCTCCACGTCAACCCCGACAAGGAGCCTACGCCT
GGACAGTTTGTGATCGTGCGGAGGAGCGGCGAAAACGTTGCAACCTTCAAACGGCTGGCGTTGGTTGATGGCGAACTGTT
CCTCGAAGCCATCAATCCCGACTGGCCCAAACGCTACATCCCTTTGAAGGAAGGCGACGTGTTCTGCGGAGTTGTCGTGG
ACGCGTCCTTGGGGAATCTCCCGTAG

Upstream 100 bases:

>100_bases
GGAGGTCTATGGCGACTTGACGTTGCATGCCGCACATTGAACCACGGTTCAATATTAAGTGTCAACCCAAGTTCAACCCC
CGGCGGCTACGATTTCAACT

Downstream 100 bases:

>100_bases
CGAGGGCACATCCAAGGTTGAAACTTCGCCGCGAATTATTAAACCAAGGTTGACATCGAAAATTGAACCGTGGTTCAATG
CTCCTACGCGCCATTCCGGC

Product: putative prophage repressor

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MVEDYWSRLKPAMDAAKLSAQQLADAMGISYQSVKKVRDGGSFGMVNNLKAAKLLGLSPEWLATGKGQHPTTSNVAAGPN
IKGKGRYPLISWVQAGEWTDICDNFQPGDADEWPPSHHNLGDCGYMLRVHGDSMTAPAGSPYSFPEGVLLHVNPDKEPTP
GQFVIVRRSGENVATFKRLALVDGELFLEAINPDWPKRYIPLKEGDVFCGVVVDASLGNLP

Sequences:

>Translated_221_residues
MVEDYWSRLKPAMDAAKLSAQQLADAMGISYQSVKKVRDGGSFGMVNNLKAAKLLGLSPEWLATGKGQHPTTSNVAAGPN
IKGKGRYPLISWVQAGEWTDICDNFQPGDADEWPPSHHNLGDCGYMLRVHGDSMTAPAGSPYSFPEGVLLHVNPDKEPTP
GQFVIVRRSGENVATFKRLALVDGELFLEAINPDWPKRYIPLKEGDVFCGVVVDASLGNLP
>Mature_221_residues
MVEDYWSRLKPAMDAAKLSAQQLADAMGISYQSVKKVRDGGSFGMVNNLKAAKLLGLSPEWLATGKGQHPTTSNVAAGPN
IKGKGRYPLISWVQAGEWTDICDNFQPGDADEWPPSHHNLGDCGYMLRVHGDSMTAPAGSPYSFPEGVLLHVNPDKEPTP
GQFVIVRRSGENVATFKRLALVDGELFLEAINPDWPKRYIPLKEGDVFCGVVVDASLGNLP

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787391, Length=222, Percent_Identity=26.1261261261261, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 23976; Mature: 23976

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEDYWSRLKPAMDAAKLSAQQLADAMGISYQSVKKVRDGGSFGMVNNLKAAKLLGLSPE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCH
WLATGKGQHPTTSNVAAGPNIKGKGRYPLISWVQAGEWTDICDNFQPGDADEWPPSHHNL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCC
GDCGYMLRVHGDSMTAPAGSPYSFPEGVLLHVNPDKEPTPGQFVIVRRSGENVATFKRLA
CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHH
LVDGELFLEAINPDWPKRYIPLKEGDVFCGVVVDASLGNLP
HCCCCEEEEECCCCCCCEEECCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MVEDYWSRLKPAMDAAKLSAQQLADAMGISYQSVKKVRDGGSFGMVNNLKAAKLLGLSPE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCH
WLATGKGQHPTTSNVAAGPNIKGKGRYPLISWVQAGEWTDICDNFQPGDADEWPPSHHNL
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCCCC
GDCGYMLRVHGDSMTAPAGSPYSFPEGVLLHVNPDKEPTPGQFVIVRRSGENVATFKRLA
CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHH
LVDGELFLEAINPDWPKRYIPLKEGDVFCGVVVDASLGNLP
HCCCCEEEEECCCCCCCEEECCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]