Click here to switch to the map view.

The map label for this gene is 120610140

Identifier: 120610140

GI number: 120610140

Start: 1600067

End: 1600489

Strand: Reverse

Name: 120610140

Synonym: Aave_1453

Alternate gene names: NA

Gene position: 1600489-1600067 (Counterclockwise)

Preceding gene: 120610142

Following gene: 120610139

Centisome position: 29.9

GC content: 73.05

Gene sequence:

>423_bases
ATGCCTGGATCCTCCGCGCCCATCCCCGCCCCAACGGCCCCCACCATCGCGCTCACCCGCTGGCTCGCCGTGGGCAGCCT
GCTGGGTCTCATCGTGCTTTGCCTGGCCTGGGAGCTCTGGCTGGCGCCGCTGCGCCCCGGCGGCTCCTGGCTGGCGCTCA
AGGCGCTGCCGCTCGCTCTGCCGCTGGCGGGCCTGCTCAAGCGCCGCATGTACACCTACCGCTGGGTCAGCCTGCTGGTG
TGGCTGTACTTCACCGAAGGGGTGGTGCGCGCATGGAGCGATGCACCGCCGGGACGCTGGCTGGCGTGCGCGGAGATCGT
GCTCTGCCTGGGCCTGTTCACGGCATGCGCTCTGCACGTGCGGCTCCGGCAGCGCCATGCCGGCGCCCGCACGGCGCGGT
CGCATCCCGCCACGCCCCCATGA

Upstream 100 bases:

>100_bases
GCGCGGTCGTGCGCCAGGGAAAGCGCGACAGGTCCGACAGCACGGTTTCGAATCGCCGCGCGAGGTGGGCAATGGGCATG
GCCGATATGATGCCATCCCG

Downstream 100 bases:

>100_bases
CCCCGGTCCGCCGCTGCCGTCCTGCGTTCCTCTCCCGTTTCGTTGTCACGAGAAGATTTCCATGACCGCCTCCCTGATCG
ACACCCTGCGCCAGATCGTC

Product: membrane protein-like

Products: NA

Alternate protein names: Transmembrane Lipoprotein

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MPGSSAPIPAPTAPTIALTRWLAVGSLLGLIVLCLAWELWLAPLRPGGSWLALKALPLALPLAGLLKRRMYTYRWVSLLV
WLYFTEGVVRAWSDAPPGRWLACAEIVLCLGLFTACALHVRLRQRHAGARTARSHPATPP

Sequences:

>Translated_140_residues
MPGSSAPIPAPTAPTIALTRWLAVGSLLGLIVLCLAWELWLAPLRPGGSWLALKALPLALPLAGLLKRRMYTYRWVSLLV
WLYFTEGVVRAWSDAPPGRWLACAEIVLCLGLFTACALHVRLRQRHAGARTARSHPATPP
>Mature_139_residues
PGSSAPIPAPTAPTIALTRWLAVGSLLGLIVLCLAWELWLAPLRPGGSWLALKALPLALPLAGLLKRRMYTYRWVSLLVW
LYFTEGVVRAWSDAPPGRWLACAEIVLCLGLFTACALHVRLRQRHAGARTARSHPATPP

Specific function: Unknown

COG id: COG3308

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15281; Mature: 15150

Theoretical pI: Translated: 11.28; Mature: 11.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGSSAPIPAPTAPTIALTRWLAVGSLLGLIVLCLAWELWLAPLRPGGSWLALKALPLAL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
PLAGLLKRRMYTYRWVSLLVWLYFTEGVVRAWSDAPPGRWLACAEIVLCLGLFTACALHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RLRQRHAGARTARSHPATPP
HHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PGSSAPIPAPTAPTIALTRWLAVGSLLGLIVLCLAWELWLAPLRPGGSWLALKALPLAL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
PLAGLLKRRMYTYRWVSLLVWLYFTEGVVRAWSDAPPGRWLACAEIVLCLGLFTACALHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RLRQRHAGARTARSHPATPP
HHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA