Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is nlpD [C]
Identifier: 120610103
GI number: 120610103
Start: 1556350
End: 1557249
Strand: Direct
Name: nlpD [C]
Synonym: Aave_1416
Alternate gene names: 120610103
Gene position: 1556350-1557249 (Clockwise)
Preceding gene: 120610102
Following gene: 120610104
Centisome position: 29.08
GC content: 71.11
Gene sequence:
>900_bases ATGCTGGTATCGCGTGGTCTTGTGACTTGGAGTTCGGTGGCGTTGGCGGTCATGGTGCTGGCCGGCTGCGGGACCCGCGT CAACAGGGCTCCGGTGGAAGACCGCGGCACCGCCGTATCCTCCTCGTCCACATCGCCGCAGTCCGGCGTCGTCGTCGGCA CGCCGCCGAAGCCCCTCCCGGGGGCTGAGAACGCCGGCAAGCCCGGCTACTACAGCGTGAAGCCCGGCGACACCCTCATC CGCATCGGGCTCGAATCCGGCCAGAGCTGGAAGGACATCGCCCGCTGGAACAACCTGGACAACCCCAACCTCATCGAGGT CGGCCAGGTGCTGCGCGTCGTGCCGCCCGGCACCACGCCGCCCGCGCAGGTGGCATCCGACACCGGCGTGGTCACGCGTC CCGTGATCTCCACGGCCATCGTGCCCGCCCCGGCGGCATCCGGGGCGAGCGCGCCGCGCAGCGGTGCGTCCGCCGTGGCG GCAGCGCCCGCTCCGGCACCTGCCCCAGCTCCGGCTGCCGGTGGCGGCGATGACGACATGGCCTTCATCTGGCCGGCATC CGGCTCGCTGGTGGCCGGCTTCGACGAGGCCCGCAACAAGGGCTACGACATCGCCGGCAAGGCGGGCGACCCGGTGCTGG CCGCCGCCGACGGCCGCGTGGTGTATGCCGGCGCGGGCCTGCGCGGCTACGGCAACCTGGTGATCCTCAAGCACAACAAC ACCTACCTGACGGCGTACGCCCACAACCAGACGCTGCTGGTCAAGGAAGACCAGTCGGTGCGGCGCGGCCAGAAGATTGC CGAAATGGGCAGCTCCGACACCGACCGCGTGAAGCTGCACTTCGAGATCCGCCGCCAGGGCAAGCCCGTGGACCCGGCGC GCTACCTGCCCGCGCGTTGA
Upstream 100 bases:
>100_bases TCGTCGTGATCGACAGGACTCCCCACGGGCTTCAGCAGAGCACGTTGGAGGCCGTACATTTTGTCCCCCTAAAATCGGGG ATTGCCTGAAGGAATTGCTT
Downstream 100 bases:
>100_bases GTTCCGCCTCGCGCCCATCCGCCAGCGGCCTCCCCGAGGGCCTGGCGGACGATACGGCCGAAGCGGAAGACGGCTCCGAC GGCGCGGAAACCCGGGTCGT
Product: peptidase M23B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLPGAENAGKPGYYSVKPGDTLI RIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTPPAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVA AAPAPAPAPAPAAGGGDDDMAFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR
Sequences:
>Translated_299_residues MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLPGAENAGKPGYYSVKPGDTLI RIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTPPAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVA AAPAPAPAPAPAAGGGDDDMAFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR >Mature_299_residues MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLPGAENAGKPGYYSVKPGDTLI RIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTPPAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVA AAPAPAPAPAPAAGGGDDDMAFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR
Specific function: May Be Involved In Stationary-Phase Survival. [C]
COG id: COG0739
COG function: function code M; Membrane proteins related to metalloendopeptidases
Gene ontology:
Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 LysM repeat [H]
Homologues:
Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=39.2996108949416, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI87082174, Length=229, Percent_Identity=39.7379912663755, Blast_Score=159, Evalue=1e-40, Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=40.8333333333333, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR016047 - InterPro: IPR002886 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]
EC number: NA
Molecular weight: Translated: 30743; Mature: 30743
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLP CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCCCCC GAENAGKPGYYSVKPGDTLIRIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTP CCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEECCCEEEEECCCCCC PAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVAAAPAPAPAPAPAAGGGDDDM HHHHCCCCCCEEHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE AFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN EEEEECCCCEEECCHHHCCCCCEECCCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECC TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR EEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHCCCCC >Mature Secondary Structure MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLP CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCCCCC GAENAGKPGYYSVKPGDTLIRIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTP CCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEECCCEEEEECCCCCC PAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVAAAPAPAPAPAPAAGGGDDDM HHHHCCCCCCEEHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE AFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN EEEEECCCCEEECCHHHCCCCCEECCCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECC TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR EEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7959068; 10984043 [H]