Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is nlpD [C]

Identifier: 120610103

GI number: 120610103

Start: 1556350

End: 1557249

Strand: Direct

Name: nlpD [C]

Synonym: Aave_1416

Alternate gene names: 120610103

Gene position: 1556350-1557249 (Clockwise)

Preceding gene: 120610102

Following gene: 120610104

Centisome position: 29.08

GC content: 71.11

Gene sequence:

>900_bases
ATGCTGGTATCGCGTGGTCTTGTGACTTGGAGTTCGGTGGCGTTGGCGGTCATGGTGCTGGCCGGCTGCGGGACCCGCGT
CAACAGGGCTCCGGTGGAAGACCGCGGCACCGCCGTATCCTCCTCGTCCACATCGCCGCAGTCCGGCGTCGTCGTCGGCA
CGCCGCCGAAGCCCCTCCCGGGGGCTGAGAACGCCGGCAAGCCCGGCTACTACAGCGTGAAGCCCGGCGACACCCTCATC
CGCATCGGGCTCGAATCCGGCCAGAGCTGGAAGGACATCGCCCGCTGGAACAACCTGGACAACCCCAACCTCATCGAGGT
CGGCCAGGTGCTGCGCGTCGTGCCGCCCGGCACCACGCCGCCCGCGCAGGTGGCATCCGACACCGGCGTGGTCACGCGTC
CCGTGATCTCCACGGCCATCGTGCCCGCCCCGGCGGCATCCGGGGCGAGCGCGCCGCGCAGCGGTGCGTCCGCCGTGGCG
GCAGCGCCCGCTCCGGCACCTGCCCCAGCTCCGGCTGCCGGTGGCGGCGATGACGACATGGCCTTCATCTGGCCGGCATC
CGGCTCGCTGGTGGCCGGCTTCGACGAGGCCCGCAACAAGGGCTACGACATCGCCGGCAAGGCGGGCGACCCGGTGCTGG
CCGCCGCCGACGGCCGCGTGGTGTATGCCGGCGCGGGCCTGCGCGGCTACGGCAACCTGGTGATCCTCAAGCACAACAAC
ACCTACCTGACGGCGTACGCCCACAACCAGACGCTGCTGGTCAAGGAAGACCAGTCGGTGCGGCGCGGCCAGAAGATTGC
CGAAATGGGCAGCTCCGACACCGACCGCGTGAAGCTGCACTTCGAGATCCGCCGCCAGGGCAAGCCCGTGGACCCGGCGC
GCTACCTGCCCGCGCGTTGA

Upstream 100 bases:

>100_bases
TCGTCGTGATCGACAGGACTCCCCACGGGCTTCAGCAGAGCACGTTGGAGGCCGTACATTTTGTCCCCCTAAAATCGGGG
ATTGCCTGAAGGAATTGCTT

Downstream 100 bases:

>100_bases
GTTCCGCCTCGCGCCCATCCGCCAGCGGCCTCCCCGAGGGCCTGGCGGACGATACGGCCGAAGCGGAAGACGGCTCCGAC
GGCGCGGAAACCCGGGTCGT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLPGAENAGKPGYYSVKPGDTLI
RIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTPPAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVA
AAPAPAPAPAPAAGGGDDDMAFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN
TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR

Sequences:

>Translated_299_residues
MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLPGAENAGKPGYYSVKPGDTLI
RIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTPPAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVA
AAPAPAPAPAPAAGGGDDDMAFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN
TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR
>Mature_299_residues
MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLPGAENAGKPGYYSVKPGDTLI
RIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTPPAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVA
AAPAPAPAPAPAAGGGDDDMAFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN
TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=39.2996108949416, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI87082174, Length=229, Percent_Identity=39.7379912663755, Blast_Score=159, Evalue=1e-40,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=40.8333333333333, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30743; Mature: 30743

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLP
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCCCCC
GAENAGKPGYYSVKPGDTLIRIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTP
CCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEECCCEEEEECCCCCC
PAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVAAAPAPAPAPAPAAGGGDDDM
HHHHCCCCCCEEHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE
AFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN
EEEEECCCCEEECCHHHCCCCCEECCCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECC
TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR
EEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHCCCCC
>Mature Secondary Structure
MLVSRGLVTWSSVALAVMVLAGCGTRVNRAPVEDRGTAVSSSSTSPQSGVVVGTPPKPLP
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCCCCC
GAENAGKPGYYSVKPGDTLIRIGLESGQSWKDIARWNNLDNPNLIEVGQVLRVVPPGTTP
CCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEECCCEEEEECCCCCC
PAQVASDTGVVTRPVISTAIVPAPAASGASAPRSGASAVAAAPAPAPAPAPAAGGGDDDM
HHHHCCCCCCEEHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE
AFIWPASGSLVAGFDEARNKGYDIAGKAGDPVLAAADGRVVYAGAGLRGYGNLVILKHNN
EEEEECCCCEEECCHHHCCCCCEECCCCCCCEEEECCCEEEEECCCCCCCCCEEEEEECC
TYLTAYAHNQTLLVKEDQSVRRGQKIAEMGSSDTDRVKLHFEIRRQGKPVDPARYLPAR
EEEEEEECCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]