Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is dnaG [H]
Identifier: 120610094
GI number: 120610094
Start: 1544048
End: 1546072
Strand: Reverse
Name: dnaG [H]
Synonym: Aave_1407
Alternate gene names: 120610094
Gene position: 1546072-1544048 (Counterclockwise)
Preceding gene: 120610096
Following gene: 120610093
Centisome position: 28.88
GC content: 71.6
Gene sequence:
>2025_bases GTGTCCATCCCCCAGTCCTTCATCCAGGAGTTGCTTTCGCGCGTCGATGTGGTCGATGTCGTCGGGCGCTACGTGCAGCT CAAGAAGGGCGGGGCCAACTTCATGGGGCTGTGCCCCTTCCACGGCGAGAAGTCGCCCTCGTTCAGCGTCAGCCCGTCCA AGCAGTTCTACCACTGCTTCGGCTGCGGCAAGAATGGCAATGCGATCAGCTTCCTGATGGAGCATGCGGGCATGGGCTTC GTGGAAGCCGTGCAGGACCTGGCCCAGCAGGTGGGCCTGCAGGTGCCGCAGGACGATGTCTCGCCGCAGGAGCGCGAGCG TGCGGCGGCGCAGCGCCAGAAGCAGGCCACCCTCACCGACGTGCTGGAGAAGGCGGGCGAGGCCTACCGCCGCCACCTGC GCGAGTCGCAGCGCGCCATCGCGTACTTCAAGGGGCGCGGCGTGTCCGGGGCGGTCGCCAAGCGCTACGGCCTGGGCTAT GCGCCCGAGGGCTGGCGGTCGCTCGCCAGCGTGTTCCCCGAGTACGACAACCCGCTGCTGCACGAGAGCGGCCTGGTGAT CGTGAACGAGGAAGACGGCAAGCGCTACGACCGTTTCCGCGACCGGGTGATGTTCCCGATCCGCAACGTGAAGGGCGAAT GCATCGGCTTCGGGGGCCGGGTGCTGGGCGACGACAAGCCCAAGTACCTCAACTCGCCCGAGACCCCCGTCTTCCACAAG GGGCGCGAGCTCTACGGCCTGTTCGAGGCGCGCGCCGCCATCCGCGAGCACGGCTACGCGCTCGTCACCGAAGGCTACAT GGACGTGGTCGCGCTGGCCCAGTTGGGCTTTCCGAACGCCGTCGCCACGCTGGGCACGGCCTGTACGCCGGACCACGTCC ACAAGCTCTTCCGCTTCACCGACACGGTGGTCTTCAGCTTCGACGGCGACGCGGCGGGCCGGCGCGCGGCGCGCAAGGCG CTCGACGGCGCCCTGCCCTACGCCACGGATACGCGCAGCGTGAAGTTCCTGTTCCTGCCCGCCGAGCACGACCCCGACAG CTTCGTGCGTGCCCATGGCACCGACGCGTTCGCGCGGCACGTGCAGGGCGCCATGCCGCTGAGCCGCTTCCTGGTGGAGG TCGTCGGCGAGGGCTGCGACCTGGGTCTGGCGGAAGGCCGCGCCCGCATGGCGGCGAACGCCCGGCCGCTGTGGACCGCC CTGCCCGACGGCGCACTCAAGCGCCAGTTGCTGGGCGAGCTGGCGGAACTGGCCCAGCTCGCGGCCAGCGACCTCTCGGA GCTCTGGGCCGCACCGGCGCACCCGGCCGGCGGTGGCCGGCAGGCCGCCGGTGGCTCCGCGCCCACCGGCGCGCCGGCCT ACGACGAGGCCCCGCCCTGGGGCGGCCCGCGCGACGGCGGCGGCTGGGCGCCCCCTGGGGATGACGGCTACGGCCACGCC CCGGCGGCCTCCTCGGGCTCCAGGCAGCCCTGGCGAAAGGGCAGCGGCGGAGGCGGAGGCGACTGGAAGAAGGGCCGCTG GCGCGACCGCGACGAGCGCCCGCCCCAGCCGCGCCTGCCGTCCACGCCCGCCGCGGGACGCGACGACCACGCAGCGCGGC TGTTGCTGTCGCACATGGAATTCCTGGAAGACCTCTCGCACGAGGACCACGCCACGCTCTGCGCCCAGCCCGCACCCCAC GGCCCCCTCTTCACCTGGCTGGAGGCGCAGTGGCACGAGCATGGTCCGCAGGCCTGGGCCGTGCTGCGCGAGAGCCTGCG CGGACACGACGCGGAGGCGTTGGCGGTGCGGGTGATGACCGGTTCGCACGCCCAGACCGAGGGCGACGCGGCCGAGCTGC GGAGCGAACTGCGCGACCTGCTCGACCGCATGCTCATGGAAGACATCAAGCGCCAGGAGAAGGAACTCATCCTGCAGGCG GCGACCGATCCGTCCGCGCTCGAGAAGTACCGCGCGCTGCAGCAGCGGCGGCAGGCCCTGCTGGGCATCGCACCCGCGAA CTTGAAAAAGGCGGGCGGGCTATAA
Upstream 100 bases:
>100_bases AAGTGGCTTGCGCCACACACGGTAGCGATTTTCAGCTACCGTTCGATCGCGTTCATCACCCGACGGGACTGCCCGGCGGC ATTCCGGCGAAAATCCCCGC
Downstream 100 bases:
>100_bases TATAGGGTTCATCGGCAAGAGCGACAGCAGCACCTCCGGGCCGGGCAACCGTGACACGCACGCACCACCGCCCCCACACC GCAAGGACTGCACACCAAAT
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 674; Mature: 673
Protein sequence:
>674_residues MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCFGCGKNGNAISFLMEHAGMGF VEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTDVLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGY APEGWRSLASVFPEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHK GRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFTDTVVFSFDGDAAGRRAARKA LDGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTA LPDGALKRQLLGELAELAQLAASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHA PAASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHMEFLEDLSHEDHATLCAQPAPH GPLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMTGSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQA ATDPSALEKYRALQQRRQALLGIAPANLKKAGGL
Sequences:
>Translated_674_residues MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCFGCGKNGNAISFLMEHAGMGF VEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTDVLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGY APEGWRSLASVFPEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHK GRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFTDTVVFSFDGDAAGRRAARKA LDGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTA LPDGALKRQLLGELAELAQLAASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHA PAASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHMEFLEDLSHEDHATLCAQPAPH GPLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMTGSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQA ATDPSALEKYRALQQRRQALLGIAPANLKKAGGL >Mature_673_residues SIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCFGCGKNGNAISFLMEHAGMGFV EAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTDVLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGYA PEGWRSLASVFPEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHKG RELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFTDTVVFSFDGDAAGRRAARKAL DGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTAL PDGALKRQLLGELAELAQLAASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHAP AASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHMEFLEDLSHEDHATLCAQPAPHG PLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMTGSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQAA TDPSALEKYRALQQRRQALLGIAPANLKKAGGL
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=438, Percent_Identity=48.1735159817352, Blast_Score=391, Evalue=1e-110,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016136 - InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR013173 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF08278 DnaG_DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.- [C]
Molecular weight: Translated: 73340; Mature: 73209
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCF CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE GCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTD CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFPEYDNPLL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCE HESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHK ECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCCCCCCCCCCHHHC GRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFT CHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHH DTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARH CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCHHHHHH VQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTALPDGALKRQLLGELAELAQL HHCCCCHHHHHHHHHCCCCCCCHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH AASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHA HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PAASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHME CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH FLEDLSHEDHATLCAQPAPHGPLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMT HHHHCCCCCCHHEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEE GSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQAATDPSALEKYRALQQRRQAL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LGIAPANLKKAGGL HCCCCCCCHHCCCC >Mature Secondary Structure SIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCF CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE GCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTD CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFPEYDNPLL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCE HESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHK ECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCCCCCCCCCCHHHC GRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFT CHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHH DTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARH CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCHHHHHH VQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTALPDGALKRQLLGELAELAQL HHCCCCHHHHHHHHHCCCCCCCHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH AASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHA HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PAASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHME CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH FLEDLSHEDHATLCAQPAPHGPLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMT HHHHCCCCCCHHEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEE GSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQAATDPSALEKYRALQQRRQAL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH LGIAPANLKKAGGL HCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]