Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is dnaG [H]

Identifier: 120610094

GI number: 120610094

Start: 1544048

End: 1546072

Strand: Reverse

Name: dnaG [H]

Synonym: Aave_1407

Alternate gene names: 120610094

Gene position: 1546072-1544048 (Counterclockwise)

Preceding gene: 120610096

Following gene: 120610093

Centisome position: 28.88

GC content: 71.6

Gene sequence:

>2025_bases
GTGTCCATCCCCCAGTCCTTCATCCAGGAGTTGCTTTCGCGCGTCGATGTGGTCGATGTCGTCGGGCGCTACGTGCAGCT
CAAGAAGGGCGGGGCCAACTTCATGGGGCTGTGCCCCTTCCACGGCGAGAAGTCGCCCTCGTTCAGCGTCAGCCCGTCCA
AGCAGTTCTACCACTGCTTCGGCTGCGGCAAGAATGGCAATGCGATCAGCTTCCTGATGGAGCATGCGGGCATGGGCTTC
GTGGAAGCCGTGCAGGACCTGGCCCAGCAGGTGGGCCTGCAGGTGCCGCAGGACGATGTCTCGCCGCAGGAGCGCGAGCG
TGCGGCGGCGCAGCGCCAGAAGCAGGCCACCCTCACCGACGTGCTGGAGAAGGCGGGCGAGGCCTACCGCCGCCACCTGC
GCGAGTCGCAGCGCGCCATCGCGTACTTCAAGGGGCGCGGCGTGTCCGGGGCGGTCGCCAAGCGCTACGGCCTGGGCTAT
GCGCCCGAGGGCTGGCGGTCGCTCGCCAGCGTGTTCCCCGAGTACGACAACCCGCTGCTGCACGAGAGCGGCCTGGTGAT
CGTGAACGAGGAAGACGGCAAGCGCTACGACCGTTTCCGCGACCGGGTGATGTTCCCGATCCGCAACGTGAAGGGCGAAT
GCATCGGCTTCGGGGGCCGGGTGCTGGGCGACGACAAGCCCAAGTACCTCAACTCGCCCGAGACCCCCGTCTTCCACAAG
GGGCGCGAGCTCTACGGCCTGTTCGAGGCGCGCGCCGCCATCCGCGAGCACGGCTACGCGCTCGTCACCGAAGGCTACAT
GGACGTGGTCGCGCTGGCCCAGTTGGGCTTTCCGAACGCCGTCGCCACGCTGGGCACGGCCTGTACGCCGGACCACGTCC
ACAAGCTCTTCCGCTTCACCGACACGGTGGTCTTCAGCTTCGACGGCGACGCGGCGGGCCGGCGCGCGGCGCGCAAGGCG
CTCGACGGCGCCCTGCCCTACGCCACGGATACGCGCAGCGTGAAGTTCCTGTTCCTGCCCGCCGAGCACGACCCCGACAG
CTTCGTGCGTGCCCATGGCACCGACGCGTTCGCGCGGCACGTGCAGGGCGCCATGCCGCTGAGCCGCTTCCTGGTGGAGG
TCGTCGGCGAGGGCTGCGACCTGGGTCTGGCGGAAGGCCGCGCCCGCATGGCGGCGAACGCCCGGCCGCTGTGGACCGCC
CTGCCCGACGGCGCACTCAAGCGCCAGTTGCTGGGCGAGCTGGCGGAACTGGCCCAGCTCGCGGCCAGCGACCTCTCGGA
GCTCTGGGCCGCACCGGCGCACCCGGCCGGCGGTGGCCGGCAGGCCGCCGGTGGCTCCGCGCCCACCGGCGCGCCGGCCT
ACGACGAGGCCCCGCCCTGGGGCGGCCCGCGCGACGGCGGCGGCTGGGCGCCCCCTGGGGATGACGGCTACGGCCACGCC
CCGGCGGCCTCCTCGGGCTCCAGGCAGCCCTGGCGAAAGGGCAGCGGCGGAGGCGGAGGCGACTGGAAGAAGGGCCGCTG
GCGCGACCGCGACGAGCGCCCGCCCCAGCCGCGCCTGCCGTCCACGCCCGCCGCGGGACGCGACGACCACGCAGCGCGGC
TGTTGCTGTCGCACATGGAATTCCTGGAAGACCTCTCGCACGAGGACCACGCCACGCTCTGCGCCCAGCCCGCACCCCAC
GGCCCCCTCTTCACCTGGCTGGAGGCGCAGTGGCACGAGCATGGTCCGCAGGCCTGGGCCGTGCTGCGCGAGAGCCTGCG
CGGACACGACGCGGAGGCGTTGGCGGTGCGGGTGATGACCGGTTCGCACGCCCAGACCGAGGGCGACGCGGCCGAGCTGC
GGAGCGAACTGCGCGACCTGCTCGACCGCATGCTCATGGAAGACATCAAGCGCCAGGAGAAGGAACTCATCCTGCAGGCG
GCGACCGATCCGTCCGCGCTCGAGAAGTACCGCGCGCTGCAGCAGCGGCGGCAGGCCCTGCTGGGCATCGCACCCGCGAA
CTTGAAAAAGGCGGGCGGGCTATAA

Upstream 100 bases:

>100_bases
AAGTGGCTTGCGCCACACACGGTAGCGATTTTCAGCTACCGTTCGATCGCGTTCATCACCCGACGGGACTGCCCGGCGGC
ATTCCGGCGAAAATCCCCGC

Downstream 100 bases:

>100_bases
TATAGGGTTCATCGGCAAGAGCGACAGCAGCACCTCCGGGCCGGGCAACCGTGACACGCACGCACCACCGCCCCCACACC
GCAAGGACTGCACACCAAAT

Product: DNA primase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 674; Mature: 673

Protein sequence:

>674_residues
MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCFGCGKNGNAISFLMEHAGMGF
VEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTDVLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGY
APEGWRSLASVFPEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHK
GRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFTDTVVFSFDGDAAGRRAARKA
LDGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTA
LPDGALKRQLLGELAELAQLAASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHA
PAASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHMEFLEDLSHEDHATLCAQPAPH
GPLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMTGSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQA
ATDPSALEKYRALQQRRQALLGIAPANLKKAGGL

Sequences:

>Translated_674_residues
MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCFGCGKNGNAISFLMEHAGMGF
VEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTDVLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGY
APEGWRSLASVFPEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHK
GRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFTDTVVFSFDGDAAGRRAARKA
LDGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTA
LPDGALKRQLLGELAELAQLAASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHA
PAASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHMEFLEDLSHEDHATLCAQPAPH
GPLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMTGSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQA
ATDPSALEKYRALQQRRQALLGIAPANLKKAGGL
>Mature_673_residues
SIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCFGCGKNGNAISFLMEHAGMGFV
EAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTDVLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGYA
PEGWRSLASVFPEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHKG
RELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFTDTVVFSFDGDAAGRRAARKAL
DGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTAL
PDGALKRQLLGELAELAQLAASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHAP
AASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHMEFLEDLSHEDHATLCAQPAPHG
PLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMTGSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQAA
TDPSALEKYRALQQRRQALLGIAPANLKKAGGL

Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]

COG id: COG0358

COG function: function code L; DNA primase (bacterial type)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

Organism=Escherichia coli, GI1789447, Length=438, Percent_Identity=48.1735159817352, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016136
- InterPro:   IPR013264
- InterPro:   IPR019475
- InterPro:   IPR006295
- InterPro:   IPR013173
- InterPro:   IPR006171
- InterPro:   IPR002694 [H]

Pfam domain/function: PF10410 DnaB_bind; PF08278 DnaG_DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]

EC number: 2.7.7.- [C]

Molecular weight: Translated: 73340; Mature: 73209

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCF
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE
GCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTD
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFPEYDNPLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCE
HESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHK
ECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCCCCCCCCCCHHHC
GRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFT
CHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHH
DTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARH
CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCHHHHHH
VQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTALPDGALKRQLLGELAELAQL
HHCCCCHHHHHHHHHCCCCCCCHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHME
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
FLEDLSHEDHATLCAQPAPHGPLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMT
HHHHCCCCCCHHEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEE
GSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQAATDPSALEKYRALQQRRQAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LGIAPANLKKAGGL
HCCCCCCCHHCCCC
>Mature Secondary Structure 
SIPQSFIQELLSRVDVVDVVGRYVQLKKGGANFMGLCPFHGEKSPSFSVSPSKQFYHCF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE
GCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQATLTD
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VLEKAGEAYRRHLRESQRAIAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFPEYDNPLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCE
HESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVLGDDKPKYLNSPETPVFHK
ECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCCCCCCCCCCHHHC
GRELYGLFEARAAIREHGYALVTEGYMDVVALAQLGFPNAVATLGTACTPDHVHKLFRFT
CHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHH
DTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLPAEHDPDSFVRAHGTDAFARH
CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCHHHHHH
VQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTALPDGALKRQLLGELAELAQL
HHCCCCHHHHHHHHHCCCCCCCHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPPWGGPRDGGGWAPPGDDGYGHA
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAASSGSRQPWRKGSGGGGGDWKKGRWRDRDERPPQPRLPSTPAAGRDDHAARLLLSHME
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
FLEDLSHEDHATLCAQPAPHGPLFTWLEAQWHEHGPQAWAVLRESLRGHDAEALAVRVMT
HHHHCCCCCCHHEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEE
GSHAQTEGDAAELRSELRDLLDRMLMEDIKRQEKELILQAATDPSALEKYRALQQRRQAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LGIAPANLKKAGGL
HCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]