Click here to switch to the map view.

The map label for this gene is ytfH [H]

Identifier: 120609983

GI number: 120609983

Start: 1423369

End: 1423848

Strand: Direct

Name: ytfH [H]

Synonym: Aave_1296

Alternate gene names: 120609983

Gene position: 1423369-1423848 (Clockwise)

Preceding gene: 120609979

Following gene: 120609985

Centisome position: 26.59

GC content: 73.33

Gene sequence:

>480_bases
ATGAACCTGCGTGCCACCATCCCCCATTCCCCGGAAGCAGGCTCGGGGCCGTCGCGCCCGCCGCCTCCAGCCTCCGGCGT
CGAGGCGTCCCTCCCCCTGGCCGAACTGATGCGCCGGGGCGATGTGCTGTCGCCGGACTGCCCGGCGCGGGAGATCCTGC
AGCACGTCACGAGCCGCTGGGGCGTGCTGGTGCTGGTGGCGCTCGACGACGGCACACTGCGGTTCAGCGAGCTGCGGCGC
AAGGTGGGCGGCGTGAGCGAGCGCATGCTGGCGCAGACGCTGCAGGTGCTGGAGCGGGATGGTTTCGTGGAGCGCCGGGC
CTATCCCGTCGTTCCGCCGCACGTCGAGTACCGCCTGACGCCTCTGGGGCGCAAGGTCGGCCTGCATGTGCAGGCCCTGG
CCGACTGGATCGGCGGGCACCTGCCTGAGATCCTGGCGGCACGGGGGCAGGCCGCGGCCGCTGCCGTCGCAGGCGGCTGA

Upstream 100 bases:

>100_bases
CGGTGATGGCGATCATGTCTTTGTCCTTGTGACGAGTGAACGAAGACGCGACAATACCCATCCAGCAAACTTTTCGTAAG
TACCTACAAAAAAGTAAGTG

Downstream 100 bases:

>100_bases
CCGGAAGGGGGCAGCCGCGCCGTGCCCCGGGTCAGGCCGCGGAGCCGGGGGCCGTGGCCCTTTGCGCCGGCGCACGCGCG
GGCATCGGGCCGGCGGGGAT

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MNLRATIPHSPEAGSGPSRPPPPASGVEASLPLAELMRRGDVLSPDCPAREILQHVTSRWGVLVLVALDDGTLRFSELRR
KVGGVSERMLAQTLQVLERDGFVERRAYPVVPPHVEYRLTPLGRKVGLHVQALADWIGGHLPEILAARGQAAAAAVAGG

Sequences:

>Translated_159_residues
MNLRATIPHSPEAGSGPSRPPPPASGVEASLPLAELMRRGDVLSPDCPAREILQHVTSRWGVLVLVALDDGTLRFSELRR
KVGGVSERMLAQTLQVLERDGFVERRAYPVVPPHVEYRLTPLGRKVGLHVQALADWIGGHLPEILAARGQAAAAAVAGG
>Mature_159_residues
MNLRATIPHSPEAGSGPSRPPPPASGVEASLPLAELMRRGDVLSPDCPAREILQHVTSRWGVLVLVALDDGTLRFSELRR
KVGGVSERMLAQTLQVLERDGFVERRAYPVVPPHVEYRLTPLGRKVGLHVQALADWIGGHLPEILAARGQAAAAAVAGG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=125, Percent_Identity=62.4, Blast_Score=169, Evalue=8e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16997; Mature: 16997

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRATIPHSPEAGSGPSRPPPPASGVEASLPLAELMRRGDVLSPDCPAREILQHVTSRW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCC
GVLVLVALDDGTLRFSELRRKVGGVSERMLAQTLQVLERDGFVERRAYPVVPPHVEYRLT
CEEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEEC
PLGRKVGLHVQALADWIGGHLPEILAARGQAAAAAVAGG
CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHCCCC
>Mature Secondary Structure
MNLRATIPHSPEAGSGPSRPPPPASGVEASLPLAELMRRGDVLSPDCPAREILQHVTSRW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCC
GVLVLVALDDGTLRFSELRRKVGGVSERMLAQTLQVLERDGFVERRAYPVVPPHVEYRLT
CEEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEEC
PLGRKVGLHVQALADWIGGHLPEILAARGQAAAAAVAGG
CCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]