Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is yceD [C]

Identifier: 120609868

GI number: 120609868

Start: 1301909

End: 1302460

Strand: Direct

Name: yceD [C]

Synonym: Aave_1180

Alternate gene names: 120609868

Gene position: 1301909-1302460 (Clockwise)

Preceding gene: 120609865

Following gene: 120609869

Centisome position: 24.32

GC content: 67.39

Gene sequence:

>552_bases
ATGACCAAGGAATTCTCTCCCCAGCGCCTCGACGTCAAGGCATTCGCGCAGGCGGGCGGTCATCTGTCCGGCCATGATTC
GCTCCTGAAATACGAGCGGCTGGCCCAGGAGGCCAAAGGGCTGCACCCTGACCTGCTCGTGGACTGGACGGCCGACGGCG
AAGTGCGGACCACGCACGGCATCGGTGGCCAGGTATGGCTGCGGCTGCGTGTGCGCGCCGCGTTCCCCATGACCTGCCAG
CGCTGCCTCGGGCCGGTGGATGTCCCCCTGGAGGTCGATCGCGAATTCCGGTTCGTCGCCGACGAGGCGACTGCCGAGGC
GCTCGACGACGAGAGCGAGGAAGACCTGCTGGCTCTGAGCCGCGAATTCAATCTGCGCGAGCTGATCGAGGACGAGCTCC
TCATGGCGCTGCCGCTCGTGCCCCGGCACGACGAATGTCCTTCTCCGGTGCGGATGGCCTCCAGCGGCGAGGATTTCGAG
GCGGCCAGCGCGGACAAGCCGAACCCCTTCGCGGCGCTCGCATCCCTCAAGACCGGCAAGCCTGGGGGTTGA

Upstream 100 bases:

>100_bases
GCGAGCAGTTCGCGTCGATAGCGGGAGGTGGAGCCCAGTACCAGCGGGCGGGGAGGGAAAGCGGGGGCAGACATGGCGGC
GATTCTCTTACACTGCCGCC

Downstream 100 bases:

>100_bases
AAAACCATTTGGGCTATAATCATGGGCTTCGCGCGAATCCCCTCGTGTCTTCAATGGGCTGATCGCGTTTTTACCAACCC
ACCCTTTCAAGACCAGGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MTKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHGIGGQVWLRLRVRAAFPMTCQ
RCLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALSREFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFE
AASADKPNPFAALASLKTGKPGG

Sequences:

>Translated_183_residues
MTKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHGIGGQVWLRLRVRAAFPMTCQ
RCLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALSREFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFE
AASADKPNPFAALASLKTGKPGG
>Mature_182_residues
TKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHGIGGQVWLRLRVRAAFPMTCQR
CLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALSREFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFEA
ASADKPNPFAALASLKTGKPGG

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20109; Mature: 19978

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHG
CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECC
IGGQVWLRLRVRAAFPMTCQRCLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALS
CCCEEEEEEEEECCCCHHHHHHCCCCCCCEECCCCEEEEHHHHHHHHHCCCCHHHHHHHH
REFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFEAASADKPNPFAALASLKTGK
HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCC
PGG
CCC
>Mature Secondary Structure 
TKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHG
CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECC
IGGQVWLRLRVRAAFPMTCQRCLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALS
CCCEEEEEEEEECCCCHHHHHHCCCCCCCEECCCCEEEEHHHHHHHHHCCCCHHHHHHHH
REFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFEAASADKPNPFAALASLKTGK
HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCC
PGG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA