Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yceD [C]
Identifier: 120609868
GI number: 120609868
Start: 1301909
End: 1302460
Strand: Direct
Name: yceD [C]
Synonym: Aave_1180
Alternate gene names: 120609868
Gene position: 1301909-1302460 (Clockwise)
Preceding gene: 120609865
Following gene: 120609869
Centisome position: 24.32
GC content: 67.39
Gene sequence:
>552_bases ATGACCAAGGAATTCTCTCCCCAGCGCCTCGACGTCAAGGCATTCGCGCAGGCGGGCGGTCATCTGTCCGGCCATGATTC GCTCCTGAAATACGAGCGGCTGGCCCAGGAGGCCAAAGGGCTGCACCCTGACCTGCTCGTGGACTGGACGGCCGACGGCG AAGTGCGGACCACGCACGGCATCGGTGGCCAGGTATGGCTGCGGCTGCGTGTGCGCGCCGCGTTCCCCATGACCTGCCAG CGCTGCCTCGGGCCGGTGGATGTCCCCCTGGAGGTCGATCGCGAATTCCGGTTCGTCGCCGACGAGGCGACTGCCGAGGC GCTCGACGACGAGAGCGAGGAAGACCTGCTGGCTCTGAGCCGCGAATTCAATCTGCGCGAGCTGATCGAGGACGAGCTCC TCATGGCGCTGCCGCTCGTGCCCCGGCACGACGAATGTCCTTCTCCGGTGCGGATGGCCTCCAGCGGCGAGGATTTCGAG GCGGCCAGCGCGGACAAGCCGAACCCCTTCGCGGCGCTCGCATCCCTCAAGACCGGCAAGCCTGGGGGTTGA
Upstream 100 bases:
>100_bases GCGAGCAGTTCGCGTCGATAGCGGGAGGTGGAGCCCAGTACCAGCGGGCGGGGAGGGAAAGCGGGGGCAGACATGGCGGC GATTCTCTTACACTGCCGCC
Downstream 100 bases:
>100_bases AAAACCATTTGGGCTATAATCATGGGCTTCGCGCGAATCCCCTCGTGTCTTCAATGGGCTGATCGCGTTTTTACCAACCC ACCCTTTCAAGACCAGGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MTKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHGIGGQVWLRLRVRAAFPMTCQ RCLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALSREFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFE AASADKPNPFAALASLKTGKPGG
Sequences:
>Translated_183_residues MTKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHGIGGQVWLRLRVRAAFPMTCQ RCLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALSREFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFE AASADKPNPFAALASLKTGKPGG >Mature_182_residues TKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHGIGGQVWLRLRVRAAFPMTCQR CLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALSREFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFEA ASADKPNPFAALASLKTGKPGG
Specific function: Unknown
COG id: COG1399
COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20109; Mature: 19978
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHG CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECC IGGQVWLRLRVRAAFPMTCQRCLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALS CCCEEEEEEEEECCCCHHHHHHCCCCCCCEECCCCEEEEHHHHHHHHHCCCCHHHHHHHH REFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFEAASADKPNPFAALASLKTGK HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCC PGG CCC >Mature Secondary Structure TKEFSPQRLDVKAFAQAGGHLSGHDSLLKYERLAQEAKGLHPDLLVDWTADGEVRTTHG CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECC IGGQVWLRLRVRAAFPMTCQRCLGPVDVPLEVDREFRFVADEATAEALDDESEEDLLALS CCCEEEEEEEEECCCCHHHHHHCCCCCCCEECCCCEEEEHHHHHHHHHCCCCHHHHHHHH REFNLRELIEDELLMALPLVPRHDECPSPVRMASSGEDFEAASADKPNPFAALASLKTGK HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCC PGG CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA