Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is rsmI [H]
Identifier: 120609866
GI number: 120609866
Start: 1300459
End: 1301286
Strand: Reverse
Name: rsmI [H]
Synonym: Aave_1178
Alternate gene names: 120609866
Gene position: 1301286-1300459 (Counterclockwise)
Preceding gene: 120609867
Following gene: 120609861
Centisome position: 24.31
GC content: 71.62
Gene sequence:
>828_bases ATGACGGAGCACGCCCGCACTCCCCTGGCGCCCGATGCGGCCGGCACGCCCCGGCAGCGCGGCACGCTGTACCTCGTTCC GGCCCCTCTGGACTTCGGATGCGATGGGCAGGCTCCGCTGGAAGATGCCCTTCCCGCAGGCACCCTGCGGAAAGCGGCAG CCATTACCCACTGGATCTGCGAGAACGCGAAGAGCACGCGCGCCTACCTCAAGCGCATCGATGCGCTCCATCCGCTGGCA GCGCCGCTGCAGGGCCAGTCCATCACCGAGTTGCCGCGCGAGGTCCACAAGAAGGGGGACCACCAGGGCGCCTCCGGCGG CGCGGCCGGCTTCGATGCCAGCCCGTTGCTGGCTCCGGCGATGGCAGGCCACGACATGGGGCTGGTCAGCGAGGCCGGGA TGCCTGCCGTGGCGGACCCCGGCAGCTCGGTCGTGCGCGCGGCCCATGACCTGGGCGTTCGCGTGGAGCCGCTCACCGGC CCCGTCTCGCTGCTGCTCGCCCTGGCGGCCAGCGGCCTCAACGGCCAGAACTTCGCGTTCAACGGCTACCTGCCGCAGGA TGCGGCCCAGCGCGCGCAGCGCATCCGGGAACTGGAGGCGCTGGCGCTGCGGCAGGGACAGACGCAGCTTTTCATCGAAA CGCCCTACCGCAACCCCGCGCTGTGGCAGGCCCTGGTCAAGACGCTGCAACCCCACACCCGGCTGGCATTCGCCAGCGGC CTGACCCTGGCCGGCGCCCGCACAGCCAGCCAGCTCGTGCGCCACTGGCGCCAGCAGCCCGACGTGCTGGACAGTCGCAC GCCCGTCGTGTTCGCCATTGGACGCTGA
Upstream 100 bases:
>100_bases GCCTGCTGGACGCCATCGTGAGCGACGATCCCACGGCGCTGGTGGGCCTGCCGCTCATCCGCACCTGCCGCATGCTGCGC AACGCGGGCCTGGTGCTGCC
Downstream 100 bases:
>100_bases TCCCGGGCAGGAACGAAAAAGAGGCGCCGCGGCGCCTCTTTTTTTGCTGGAAGTGAACCCGCCTGTTCAGCGCACCGCCG GCAGGCTGGCGCCCAGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: 16S rRNA 2'-O-ribose C1402 methyltransferase; rRNA (cytidine-2'-O-)-methyltransferase RsmI [H]
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MTEHARTPLAPDAAGTPRQRGTLYLVPAPLDFGCDGQAPLEDALPAGTLRKAAAITHWICENAKSTRAYLKRIDALHPLA APLQGQSITELPREVHKKGDHQGASGGAAGFDASPLLAPAMAGHDMGLVSEAGMPAVADPGSSVVRAAHDLGVRVEPLTG PVSLLLALAASGLNGQNFAFNGYLPQDAAQRAQRIRELEALALRQGQTQLFIETPYRNPALWQALVKTLQPHTRLAFASG LTLAGARTASQLVRHWRQQPDVLDSRTPVVFAIGR
Sequences:
>Translated_275_residues MTEHARTPLAPDAAGTPRQRGTLYLVPAPLDFGCDGQAPLEDALPAGTLRKAAAITHWICENAKSTRAYLKRIDALHPLA APLQGQSITELPREVHKKGDHQGASGGAAGFDASPLLAPAMAGHDMGLVSEAGMPAVADPGSSVVRAAHDLGVRVEPLTG PVSLLLALAASGLNGQNFAFNGYLPQDAAQRAQRIRELEALALRQGQTQLFIETPYRNPALWQALVKTLQPHTRLAFASG LTLAGARTASQLVRHWRQQPDVLDSRTPVVFAIGR >Mature_274_residues TEHARTPLAPDAAGTPRQRGTLYLVPAPLDFGCDGQAPLEDALPAGTLRKAAAITHWICENAKSTRAYLKRIDALHPLAA PLQGQSITELPREVHKKGDHQGASGGAAGFDASPLLAPAMAGHDMGLVSEAGMPAVADPGSSVVRAAHDLGVRVEPLTGP VSLLLALAASGLNGQNFAFNGYLPQDAAQRAQRIRELEALALRQGQTQLFIETPYRNPALWQALVKTLQPHTRLAFASGL TLAGARTASQLVRHWRQQPDVLDSRTPVVFAIGR
Specific function: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA [H]
COG id: COG0313
COG function: function code R; Predicted methyltransferases
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. RsmI family [H]
Homologues:
Organism=Escherichia coli, GI1789535, Length=130, Percent_Identity=33.8461538461538, Blast_Score=75, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000878 - InterPro: IPR014777 - InterPro: IPR008189 - InterPro: IPR018063 [H]
Pfam domain/function: PF00590 TP_methylase [H]
EC number: NA
Molecular weight: Translated: 29162; Mature: 29030
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHARTPLAPDAAGTPRQRGTLYLVPAPLDFGCDGQAPLEDALPAGTLRKAAAITHWIC CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH ENAKSTRAYLKRIDALHPLAAPLQGQSITELPREVHKKGDHQGASGGAAGFDASPLLAPA HCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH MAGHDMGLVSEAGMPAVADPGSSVVRAAHDLGVRVEPLTGPVSLLLALAASGLNGQNFAF HCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCEEE NGYLPQDAAQRAQRIRELEALALRQGQTQLFIETPYRNPALWQALVKTLQPHTRLAFASG CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCC LTLAGARTASQLVRHWRQQPDVLDSRTPVVFAIGR CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC >Mature Secondary Structure TEHARTPLAPDAAGTPRQRGTLYLVPAPLDFGCDGQAPLEDALPAGTLRKAAAITHWIC CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHH ENAKSTRAYLKRIDALHPLAAPLQGQSITELPREVHKKGDHQGASGGAAGFDASPLLAPA HCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH MAGHDMGLVSEAGMPAVADPGSSVVRAAHDLGVRVEPLTGPVSLLLALAASGLNGQNFAF HCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCEEE NGYLPQDAAQRAQRIRELEALALRQGQTQLFIETPYRNPALWQALVKTLQPHTRLAFASG CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHCC LTLAGARTASQLVRHWRQQPDVLDSRTPVVFAIGR CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]