Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ychA [C]
Identifier: 120609857
GI number: 120609857
Start: 1289902
End: 1290753
Strand: Direct
Name: ychA [C]
Synonym: Aave_1169
Alternate gene names: 120609857
Gene position: 1289902-1290753 (Clockwise)
Preceding gene: 120609856
Following gene: 120609862
Centisome position: 24.1
GC content: 67.61
Gene sequence:
>852_bases ATGCCTCTGAGCTATTCCCTACCGACACCGCTCGAATATTTCGCCGCTCTCGTGCAGAGCGACGAGCAGTTTCCGCTACT GGAAGCTGCGGCCTGCATCGCCCACGACGAGTACCCCGAATTCGACGTGCAGCAGTTGCTCGGCGACATGGACCAATTGC TGGCCCGGGTGCGTCGCCGGTTGCCGGAGGACGCATCCTCCCTGCAGCGGCTGCGGTCGCTCAACCAGTTCTTCTTCCAC GACCTGGGCTTCGGCGGCAACGTCAACAACTACTACGACCCGGACAACAGCTATCTGAACGCCGTGCTGCGCACGCGCCG CGGCATCCCGATCTCGCTGGCCGTGCTGTGGATGGAACTGGCGCAGGGGCTCGGACTGCATGCGCGGGGCATCTCGTTTC CCGGGCATTTCATGGTCAAGGTGCTGCTGCCGCGCGGACAGGTGGTGCTGGACCCGACCACGGGCCAGTCCCTGTCCCGC GAAGACCTGGCCGAGCGTCTGGAGCCGTTCCGGCGGCGCAGCGGCCTGGTGGACGATTTCGAGGTGCCCCTGGGGCTCTA CCTGCAGGCCGCCCCGGCCCGCGAGGTCATCGCCCGCATGCTGCGCAACCTGAAGGAAATCCACCGTTCCCAGCAGGATT GGGGACGCCTCGCGGCCGTGCAGGAGCGGCTGGTGGTGCTGCTGCCCGATGCCTGGGGCGAGTGGCGGGACCGCGGCCTC GCGCGGGCCGAACTGGGCCATGCGGAAGGAGCGGTGTCGGACCTCGAAACCTATCTGGCCCATGCCGAGGATGCGCTCGA TGTCGATGCCATCGCCGCGCGGCTCGAGCAGCTGCGGCGTGCCGGGGACTGA
Upstream 100 bases:
>100_bases TGCGCCAGCTGCTGCGCCGCTGAAGCCCGACAGAAATTTTACCAATGCGTGGAATGCGTCTGCTTGACGCCCCCCGGCGC GCGCCCGTACAACCGCTGGC
Downstream 100 bases:
>100_bases CGGGCCGCGGCGGCCGCCTCACTGCCGCGCCGTGCGGACGTTGGCTGGCAGCGCCTGGGGGTGGCTGGTGCGCAGCGGGT TGATGTCCAGCCCGCCACGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MPLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRRLPEDASSLQRLRSLNQFFFH DLGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMELAQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSR EDLAERLEPFRRRSGLVDDFEVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGL ARAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD
Sequences:
>Translated_283_residues MPLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRRLPEDASSLQRLRSLNQFFFH DLGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMELAQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSR EDLAERLEPFRRRSGLVDDFEVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGL ARAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD >Mature_282_residues PLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRRLPEDASSLQRLRSLNQFFFHD LGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMELAQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSRE DLAERLEPFRRRSGLVDDFEVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGLA RAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD
Specific function: Unknown
COG id: COG2912
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 TPR repeats [H]
Homologues:
Organism=Escherichia coli, GI1787465, Length=241, Percent_Identity=24.4813278008299, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31894; Mature: 31762
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRR CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LPEDASSLQRLRSLNQFFFHDLGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMEL CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH AQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSREDLAERLEPFRRRSGLVDDF HHCCCCCCCCCCCCHHHHHHEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC EVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGL CCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCC ARAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure PLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRR CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LPEDASSLQRLRSLNQFFFHDLGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMEL CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH AQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSREDLAERLEPFRRRSGLVDDF HHCCCCCCCCCCCCHHHHHHEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC EVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGL CCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCC ARAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]