Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ychA [C]

Identifier: 120609857

GI number: 120609857

Start: 1289902

End: 1290753

Strand: Direct

Name: ychA [C]

Synonym: Aave_1169

Alternate gene names: 120609857

Gene position: 1289902-1290753 (Clockwise)

Preceding gene: 120609856

Following gene: 120609862

Centisome position: 24.1

GC content: 67.61

Gene sequence:

>852_bases
ATGCCTCTGAGCTATTCCCTACCGACACCGCTCGAATATTTCGCCGCTCTCGTGCAGAGCGACGAGCAGTTTCCGCTACT
GGAAGCTGCGGCCTGCATCGCCCACGACGAGTACCCCGAATTCGACGTGCAGCAGTTGCTCGGCGACATGGACCAATTGC
TGGCCCGGGTGCGTCGCCGGTTGCCGGAGGACGCATCCTCCCTGCAGCGGCTGCGGTCGCTCAACCAGTTCTTCTTCCAC
GACCTGGGCTTCGGCGGCAACGTCAACAACTACTACGACCCGGACAACAGCTATCTGAACGCCGTGCTGCGCACGCGCCG
CGGCATCCCGATCTCGCTGGCCGTGCTGTGGATGGAACTGGCGCAGGGGCTCGGACTGCATGCGCGGGGCATCTCGTTTC
CCGGGCATTTCATGGTCAAGGTGCTGCTGCCGCGCGGACAGGTGGTGCTGGACCCGACCACGGGCCAGTCCCTGTCCCGC
GAAGACCTGGCCGAGCGTCTGGAGCCGTTCCGGCGGCGCAGCGGCCTGGTGGACGATTTCGAGGTGCCCCTGGGGCTCTA
CCTGCAGGCCGCCCCGGCCCGCGAGGTCATCGCCCGCATGCTGCGCAACCTGAAGGAAATCCACCGTTCCCAGCAGGATT
GGGGACGCCTCGCGGCCGTGCAGGAGCGGCTGGTGGTGCTGCTGCCCGATGCCTGGGGCGAGTGGCGGGACCGCGGCCTC
GCGCGGGCCGAACTGGGCCATGCGGAAGGAGCGGTGTCGGACCTCGAAACCTATCTGGCCCATGCCGAGGATGCGCTCGA
TGTCGATGCCATCGCCGCGCGGCTCGAGCAGCTGCGGCGTGCCGGGGACTGA

Upstream 100 bases:

>100_bases
TGCGCCAGCTGCTGCGCCGCTGAAGCCCGACAGAAATTTTACCAATGCGTGGAATGCGTCTGCTTGACGCCCCCCGGCGC
GCGCCCGTACAACCGCTGGC

Downstream 100 bases:

>100_bases
CGGGCCGCGGCGGCCGCCTCACTGCCGCGCCGTGCGGACGTTGGCTGGCAGCGCCTGGGGGTGGCTGGTGCGCAGCGGGT
TGATGTCCAGCCCGCCACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MPLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRRLPEDASSLQRLRSLNQFFFH
DLGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMELAQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSR
EDLAERLEPFRRRSGLVDDFEVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGL
ARAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD

Sequences:

>Translated_283_residues
MPLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRRLPEDASSLQRLRSLNQFFFH
DLGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMELAQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSR
EDLAERLEPFRRRSGLVDDFEVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGL
ARAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD
>Mature_282_residues
PLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRRLPEDASSLQRLRSLNQFFFHD
LGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMELAQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSRE
DLAERLEPFRRRSGLVDDFEVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGLA
RAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=241, Percent_Identity=24.4813278008299, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31894; Mature: 31762

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRR
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LPEDASSLQRLRSLNQFFFHDLGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMEL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
AQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSREDLAERLEPFRRRSGLVDDF
HHCCCCCCCCCCCCHHHHHHEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
EVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGL
CCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCC
ARAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD
HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLSYSLPTPLEYFAALVQSDEQFPLLEAAACIAHDEYPEFDVQQLLGDMDQLLARVRRR
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LPEDASSLQRLRSLNQFFFHDLGFGGNVNNYYDPDNSYLNAVLRTRRGIPISLAVLWMEL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
AQGLGLHARGISFPGHFMVKVLLPRGQVVLDPTTGQSLSREDLAERLEPFRRRSGLVDDF
HHCCCCCCCCCCCCHHHHHHEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
EVPLGLYLQAAPAREVIARMLRNLKEIHRSQQDWGRLAAVQERLVVLLPDAWGEWRDRGL
CCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHCCC
ARAELGHAEGAVSDLETYLAHAEDALDVDAIAARLEQLRRAGD
HHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]