Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is bkdR [H]
Identifier: 120609846
GI number: 120609846
Start: 1278632
End: 1279111
Strand: Direct
Name: bkdR [H]
Synonym: Aave_1158
Alternate gene names: 120609846
Gene position: 1278632-1279111 (Clockwise)
Preceding gene: 120609842
Following gene: 120609848
Centisome position: 23.89
GC content: 67.71
Gene sequence:
>480_bases ATGCAAACAGAACTGGATCGGACCGACCGCCAGATCGTGGCGGCCCTGCAGGACGACGCCCGCCTGACCTCGGGCGAGCT CGCGCAGATCGCGCACCTGTCCCAATCGCCCTGCTGGCGGCGGGTGAAGCGGCTGGAGGAAGAAGGCGTGATCGCGGGCT ACCACGCCGCGCTCGACCGCCGGGCGCTGGGACTCGGAGTGATGGTGTTCGTGATGGTGGGCATCGACCACCAGACCGAA GCTTCGTCGCTGCCTTTCGAGGAGGCGGTGTGCGCCATTCCCGAGGTGGTCATGTTCCACGGCATCTCCGGGCCCGAGGA TTTCATGCTCGTGGTGGTCGCGCGCGACCTGGACGATTACTCGCAGCTGCTGCAGAACCGCCTGCACCGCCTGCCCGGCG TGCGGCGCGTGCACAGCTATTTCTCGCTGCAGGAGTTCAAGGGCCGCGTCGGCGGCCTCCCCGTGCCGGCTACAGGATGA
Upstream 100 bases:
>100_bases CGCGCATCCTAGGCAGGGCAGCGGCGCGTGGTGTCGTTTAATCCCTACAGCTCTGAAAATTGGAAAAATCTGCCCCGTGC GGCTGGATGGGGAAAAATTT
Downstream 100 bases:
>100_bases AGCCTTCCGGCAGCGGTCCCATGCCGTGCCGGCGCCTCGCCCGGCCGCAGGCCTCGCTGCCGGCCTCGAACTCGCGGCAG GGCGACGGCCGCCATTCATA
Product: AsnC family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 159; Mature: 159
Protein sequence:
>159_residues MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDRRALGLGVMVFVMVGIDHQTE ASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDYSQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG
Sequences:
>Translated_159_residues MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDRRALGLGVMVFVMVGIDHQTE ASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDYSQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG >Mature_159_residues MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDRRALGLGVMVFVMVGIDHQTE ASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDYSQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG
Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=33.112582781457, Blast_Score=106, Evalue=7e-25, Organism=Escherichia coli, GI1787116, Length=144, Percent_Identity=36.8055555555556, Blast_Score=96, Evalue=9e-22,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011008 - InterPro: IPR000485 - InterPro: IPR019885 - InterPro: IPR019888 - InterPro: IPR019887 - InterPro: IPR011991 [H]
Pfam domain/function: PF01037 AsnC_trans_reg [H]
EC number: NA
Molecular weight: Translated: 17650; Mature: 17650
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS50956 HTH_ASNC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDR CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEHHHHHHHH RALGLGVMVFVMVGIDHQTEASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDY HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCHHHH SQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDR CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEHHHHHHHH RALGLGVMVFVMVGIDHQTEASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDY HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCHHHH SQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8320210 [H]