Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is bkdR [H]

Identifier: 120609846

GI number: 120609846

Start: 1278632

End: 1279111

Strand: Direct

Name: bkdR [H]

Synonym: Aave_1158

Alternate gene names: 120609846

Gene position: 1278632-1279111 (Clockwise)

Preceding gene: 120609842

Following gene: 120609848

Centisome position: 23.89

GC content: 67.71

Gene sequence:

>480_bases
ATGCAAACAGAACTGGATCGGACCGACCGCCAGATCGTGGCGGCCCTGCAGGACGACGCCCGCCTGACCTCGGGCGAGCT
CGCGCAGATCGCGCACCTGTCCCAATCGCCCTGCTGGCGGCGGGTGAAGCGGCTGGAGGAAGAAGGCGTGATCGCGGGCT
ACCACGCCGCGCTCGACCGCCGGGCGCTGGGACTCGGAGTGATGGTGTTCGTGATGGTGGGCATCGACCACCAGACCGAA
GCTTCGTCGCTGCCTTTCGAGGAGGCGGTGTGCGCCATTCCCGAGGTGGTCATGTTCCACGGCATCTCCGGGCCCGAGGA
TTTCATGCTCGTGGTGGTCGCGCGCGACCTGGACGATTACTCGCAGCTGCTGCAGAACCGCCTGCACCGCCTGCCCGGCG
TGCGGCGCGTGCACAGCTATTTCTCGCTGCAGGAGTTCAAGGGCCGCGTCGGCGGCCTCCCCGTGCCGGCTACAGGATGA

Upstream 100 bases:

>100_bases
CGCGCATCCTAGGCAGGGCAGCGGCGCGTGGTGTCGTTTAATCCCTACAGCTCTGAAAATTGGAAAAATCTGCCCCGTGC
GGCTGGATGGGGAAAAATTT

Downstream 100 bases:

>100_bases
AGCCTTCCGGCAGCGGTCCCATGCCGTGCCGGCGCCTCGCCCGGCCGCAGGCCTCGCTGCCGGCCTCGAACTCGCGGCAG
GGCGACGGCCGCCATTCATA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDRRALGLGVMVFVMVGIDHQTE
ASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDYSQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG

Sequences:

>Translated_159_residues
MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDRRALGLGVMVFVMVGIDHQTE
ASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDYSQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG
>Mature_159_residues
MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDRRALGLGVMVFVMVGIDHQTE
ASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDYSQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=33.112582781457, Blast_Score=106, Evalue=7e-25,
Organism=Escherichia coli, GI1787116, Length=144, Percent_Identity=36.8055555555556, Blast_Score=96, Evalue=9e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17650; Mature: 17650

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDR
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEHHHHHHHH
RALGLGVMVFVMVGIDHQTEASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDY
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCHHHH
SQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQTELDRTDRQIVAALQDDARLTSGELAQIAHLSQSPCWRRVKRLEEEGVIAGYHAALDR
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEHHHHHHHH
RALGLGVMVFVMVGIDHQTEASSLPFEEAVCAIPEVVMFHGISGPEDFMLVVVARDLDDY
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHCHHHH
SQLLQNRLHRLPGVRRVHSYFSLQEFKGRVGGLPVPATG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]