Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is dcd
Identifier: 120609832
GI number: 120609832
Start: 1259359
End: 1259925
Strand: Direct
Name: dcd
Synonym: Aave_1144
Alternate gene names: 120609832
Gene position: 1259359-1259925 (Clockwise)
Preceding gene: 120609831
Following gene: 120609833
Centisome position: 23.53
GC content: 62.61
Gene sequence:
>567_bases ATGAGCATCAAGAGCGACAAATGGATCCGCCGCATGGCCGAACAGCACGGCATGATCGAGCCGTTCGAGCCCGGCCAGAT CCGCGAAAACGACGGCCGCAAGATCATCAGCTACGGCACCAGCAGCTACGGCTACGACATCCGCTGCGCGCCCGAATTCA AGGTGTTCACCAATATCCACAGCACCGTGGTGGACCCCAAGCATTTCGACGAGAAAAGCTTCGTCGATTTCCATGGCGAC AGCTGCATCATCCCCCCCAACAGCTTCGCGCTGGCGCGCACCGTGGAGTACTTCCGCATCCCGCGCAACGTGCTTACCAT CTGCCTGGGCAAGAGCACCTATGCCCGCTGCGGCATCATCGTGAACGTCACGCCCTTCGAGCCCGAATGGGAGGGCTACG TGACGCTCGAGTTCAGCAACACCACGCCGCTGCCGGCGCGCATCTATGCCGGCGAGGGCTGCGCCCAGGTGCTGTTCTTC GAAAGCGACGAGGTCTGCGAGGTGAGCTACCGCGACCGCGGCGGCAAATACCAGGGACAGGTCGGCGTCACGCTGCCCAA GGCCTGA
Upstream 100 bases:
>100_bases ACCCCTGAGGTACCCTGCGGGCCGTCCGGGCCTGCTATGAAAAGAGTAGTATCGCGTCCGCGTGCCGTCGTCCGCATGGC ACGCCGAGGAGAAAGAGCAC
Downstream 100 bases:
>100_bases ACAGCGCGCGGCGGGTGCGCGACTGGCGCGTGTCCTACAGGCGGGCGGCCTGTTTCTCCGGTGCGAAGGCCGGGTCGGAT CTCTAGCATGTGCATCAAGG
Product: deoxycytidine triphosphate deaminase
Products: NA
Alternate protein names: dCTP deaminase
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKHFDEKSFVDFHGD SCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFF ESDEVCEVSYRDRGGKYQGQVGVTLPKA
Sequences:
>Translated_188_residues MSIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKHFDEKSFVDFHGD SCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFF ESDEVCEVSYRDRGGKYQGQVGVTLPKA >Mature_187_residues SIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKHFDEKSFVDFHGDS CIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFFE SDEVCEVSYRDRGGKYQGQVGVTLPKA
Specific function: De novo synthesis of thymidylate. [C]
COG id: COG0717
COG function: function code F; Deoxycytidine deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dCTP deaminase family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DCD_ACIAC (A1TL98)
Other databases:
- EMBL: CP000512 - RefSeq: YP_969510.1 - ProteinModelPortal: A1TL98 - SMR: A1TL98 - STRING: A1TL98 - GeneID: 4665303 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_1144 - NMPDR: fig|397945.5.peg.995 - eggNOG: COG0717 - HOGENOM: HBG553199 - OMA: MEYFRIP - PhylomeDB: A1TL98 - ProtClustDB: PRK00416 - BioCyc: AAVE397945:AAVE_1144-MONOMER - HAMAP: MF_00146 - InterPro: IPR011962 - InterPro: IPR008180 - TIGRFAMs: TIGR02274
Pfam domain/function: PF00692 dUTPase
EC number: =3.5.4.13
Molecular weight: Translated: 21294; Mature: 21163
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIH CCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEEECCCCEEEECHH STVVDPKHFDEKSFVDFHGDSCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGII HHCCCCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHCCCHHEEEEECCCCCCEEEEE VNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFFESDEVCEVSYRDRGGKYQGQ EEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEECCE VGVTLPKA EEEEECCC >Mature Secondary Structure SIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIH CCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEEECCCCEEEECHH STVVDPKHFDEKSFVDFHGDSCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGII HHCCCCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHCCCHHEEEEECCCCCCEEEEE VNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFFESDEVCEVSYRDRGGKYQGQ EEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEECCE VGVTLPKA EEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA