Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is dcd

Identifier: 120609832

GI number: 120609832

Start: 1259359

End: 1259925

Strand: Direct

Name: dcd

Synonym: Aave_1144

Alternate gene names: 120609832

Gene position: 1259359-1259925 (Clockwise)

Preceding gene: 120609831

Following gene: 120609833

Centisome position: 23.53

GC content: 62.61

Gene sequence:

>567_bases
ATGAGCATCAAGAGCGACAAATGGATCCGCCGCATGGCCGAACAGCACGGCATGATCGAGCCGTTCGAGCCCGGCCAGAT
CCGCGAAAACGACGGCCGCAAGATCATCAGCTACGGCACCAGCAGCTACGGCTACGACATCCGCTGCGCGCCCGAATTCA
AGGTGTTCACCAATATCCACAGCACCGTGGTGGACCCCAAGCATTTCGACGAGAAAAGCTTCGTCGATTTCCATGGCGAC
AGCTGCATCATCCCCCCCAACAGCTTCGCGCTGGCGCGCACCGTGGAGTACTTCCGCATCCCGCGCAACGTGCTTACCAT
CTGCCTGGGCAAGAGCACCTATGCCCGCTGCGGCATCATCGTGAACGTCACGCCCTTCGAGCCCGAATGGGAGGGCTACG
TGACGCTCGAGTTCAGCAACACCACGCCGCTGCCGGCGCGCATCTATGCCGGCGAGGGCTGCGCCCAGGTGCTGTTCTTC
GAAAGCGACGAGGTCTGCGAGGTGAGCTACCGCGACCGCGGCGGCAAATACCAGGGACAGGTCGGCGTCACGCTGCCCAA
GGCCTGA

Upstream 100 bases:

>100_bases
ACCCCTGAGGTACCCTGCGGGCCGTCCGGGCCTGCTATGAAAAGAGTAGTATCGCGTCCGCGTGCCGTCGTCCGCATGGC
ACGCCGAGGAGAAAGAGCAC

Downstream 100 bases:

>100_bases
ACAGCGCGCGGCGGGTGCGCGACTGGCGCGTGTCCTACAGGCGGGCGGCCTGTTTCTCCGGTGCGAAGGCCGGGTCGGAT
CTCTAGCATGTGCATCAAGG

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKHFDEKSFVDFHGD
SCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFF
ESDEVCEVSYRDRGGKYQGQVGVTLPKA

Sequences:

>Translated_188_residues
MSIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKHFDEKSFVDFHGD
SCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFF
ESDEVCEVSYRDRGGKYQGQVGVTLPKA
>Mature_187_residues
SIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIHSTVVDPKHFDEKSFVDFHGDS
CIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFFE
SDEVCEVSYRDRGGKYQGQVGVTLPKA

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCD_ACIAC (A1TL98)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_969510.1
- ProteinModelPortal:   A1TL98
- SMR:   A1TL98
- STRING:   A1TL98
- GeneID:   4665303
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_1144
- NMPDR:   fig|397945.5.peg.995
- eggNOG:   COG0717
- HOGENOM:   HBG553199
- OMA:   MEYFRIP
- PhylomeDB:   A1TL98
- ProtClustDB:   PRK00416
- BioCyc:   AAVE397945:AAVE_1144-MONOMER
- HAMAP:   MF_00146
- InterPro:   IPR011962
- InterPro:   IPR008180
- TIGRFAMs:   TIGR02274

Pfam domain/function: PF00692 dUTPase

EC number: =3.5.4.13

Molecular weight: Translated: 21294; Mature: 21163

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIH
CCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEEECCCCEEEECHH
STVVDPKHFDEKSFVDFHGDSCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGII
HHCCCCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHCCCHHEEEEECCCCCCEEEEE
VNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFFESDEVCEVSYRDRGGKYQGQ
EEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEECCE
VGVTLPKA
EEEEECCC
>Mature Secondary Structure 
SIKSDKWIRRMAEQHGMIEPFEPGQIRENDGRKIISYGTSSYGYDIRCAPEFKVFTNIH
CCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCCCEEEEECCCCEEEECHH
STVVDPKHFDEKSFVDFHGDSCIIPPNSFALARTVEYFRIPRNVLTICLGKSTYARCGII
HHCCCCCCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHCCCHHEEEEECCCCCCEEEEE
VNVTPFEPEWEGYVTLEFSNTTPLPARIYAGEGCAQVLFFESDEVCEVSYRDRGGKYQGQ
EEECCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEECCE
VGVTLPKA
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA