Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120609736
Identifier: 120609736
GI number: 120609736
Start: 1145531
End: 1148356
Strand: Reverse
Name: 120609736
Synonym: Aave_1043
Alternate gene names: NA
Gene position: 1148356-1145531 (Counterclockwise)
Preceding gene: 120609738
Following gene: 120609735
Centisome position: 21.45
GC content: 68.9
Gene sequence:
>2826_bases GTGTCCAGACGCCTGAGACTGTTGTTTTTCTGCCTGATCGCGCAGCTTTCCGCGGCAGTGGCCTGGGCCGCGTCGCCGGC AGTGGCACTGCATTACGGGCCCTCCGCCCCCCTGTCCGAGCTGAAGGTGTTCGACATCGTGGTGGTCGAGCCGGACCACG GCTACGACCCGCTGGCCTTCGCGAAAACGGGCAGCGCCCTCTATGCCTACGTCTCCGTGGCCGAGGTGCAGTCCTCGCGC GCGTATTTCCGCGACATCCCCGAGGCCTGGAAGATGGCCCGCAACGGCGCCTGGAACTCCGAGGTGATCGACCAGACGCC CGCCGAGTGGCCCGAATTCTTCGCCACCCGGGTGGTCGCTCCCCTGTGGGAGAAAGGCTACCGCGGCTTCTTCCTCGACA CGCTGGACTCCTACCGCCTGGCCAGGCAATTCGACGAGGCGGCGCAGCAGCAGGGCCTCGTGCGGGTGATCGAGACGCTG CACCAGCGCTTTCCCGGCATCCGGCTGATCCTGAACCGGGGCTTCGAGATCGTGCCGCGGGTCAAGGACAAGGTGCAGAT GGTCGCCGCCGAGTCGCTCTTCCAGGGATGGAATGCCAATACGCGCCGCTACGAGGAAGTGAAGGCCTCCGACCGCGAAT GGCTGCTGGGGCAGTTGCGCACCATCCACGAGCGCGACGGCCTGCCGGTGCTGGCCATCGACTACGTGCCGCCCGCCGAC CGGGAACTCACCCGCGCGACGGCCGAGCGCATCCGGGCGCTGGGCTTCATCCCCTGGGTGACCGACGGGCAGGTGAGCAC CGTGGGCGTGGGCAGCGTCGAGCTGGTGCCGCGCCGGGTGCTGGTCGTCTATTACGGCGGAGATACGACCGCACTGGACT ACTTGGACGCCCACAGATTCCTGCAAATGCCGCTGAACCACATGGGCTATGTGGTGGACTATGCGGATGTGCGCAAACCG CTGCCCGAAGGCATCCTCCAGGATCGGTACGCGGGCATCGTCACCTGGTTCTCGGGCTACCTGCCCGAGGGCCGAATGCG CACCGTGAGCCAGTGGCTGCTCGCGCGGCTCGGCGAACGCATGCCGGTCGCCGTGATGGGGAACTTCGGCTTCGCGCTGG ACCGGCAGTTCAACGAGGCGCTGGGCATCAAGGAAAACGCGAGCCCGCCGCGCGGCGAGCAGCGGGTGGCCGTGCAGGAC CCGATGATGGGTTTCGAGCTGGCGGTGCAGCCCTCCAGCGGCTCGCGCTTCGATTGGGTGACGCGCAACGGTGCCCCGGC CCTGCAGCCCGCGCGCGCGCTGATCGAGCACCGCGACGCGCGCGGCGGCTCCTACCTGGGCGGCGCCATACTGCCGTGGG GGGGCTTCGTCGTCGATCCCTTCGTGGTGACGGCAGTGCCCGGCACCGACTACGCCCGCTGGATGGTCGATCCCTTCGCC TTCCTCACGCAGGCGCTGCGGCTGCAGCCGGTGCCGGTGCCGGACATCACCACGGAGAACGGCAGGCGCCTGCTGTTCTC GCACGTGGACGGCGACGGTTTCCCCTCGCGCGCGGAGCTGGCGGGCAGCCCCAACGCGGGCGCCGTGCTGCTCAAGGAAA TCTTCGAGAAATACACCCAGGTGCCGCAGACCATGTCCGTCATCGAGGCCGAGGTCGCGCCCCACGGGCTGCACCCCGAC ACCAGCGCGGAGATGGAGGACATCGCGCGGCGCATGTTCCGCCTGCCGCACGTGGAGATCGCCAGCCACACCTACTCGCA CCCGTTCCTCTGGGACCGCAGCGTTCGGCACGGAGTGTTCAGCGACAATTCGGAAGCCGCCATGAGCCTGGACGTGCCGG GGTACACCATGGACCTGCGGCGCGAGATCGTGGGCTCCACCGACTACATCAACAGCCGCCTCGCTCCGCCCGACAAGCGC GTGAAGATCCTGCTGTGGTCGGGCGACACCGCACCCAACGCGGAGGCGCTGGAGATCACCGAGAGCGCGGGCCTGCTGAA CATGAACGGCGGCGATACCTCCATCACGCGCACCAATCCGTCGCTCACGGCCATCGGCGCCTTCGGCATCCAGAAGAACG GCTACCTGCAGGTGTACGCGCCCATCACCAACGAGAACATCTACACCAATCTCTGGAGGGGCCCTTATTACGGCTTCGAG CAGGTGATCCAGAGCTTCGAGATGACCGACAGGCCCCGGCGCATCAAGCCGGTGGACATCTACTACCACGTGTATTCCGC CAGCAAGCGCGCGGGCCTGACCGCGCTGCGCAAGGTGTACGACTGGGCCATGGCGCAGCCGCTGCATCCGGTGTTCGCGT CGGAATACATCCGCAAGGTGCGCGACTTCCACACCATCGCCATCGCGCGCGACGGCGGCGGCTGGCGCGTGCGCGGCGAC GGCGAACTGCGCACGCTGCGCCTGCCCGGCGCGCTCGGCACGCCGCAGCTCGCATCCAGCCAGGGCGTGGCGGGCTACCG CGGCGGGGCCGAAGGCCCGTACGTGCACCTCACGGGTGGATCGGCGTGGCTGCGCACGGAGCAGGCCTCCGGCACCGCGG CACGGCCGGTGCCCTATCTCTACGAAGCCAATGCCCGCCTCGCGGACTGGAGCGCCGCGGCCGACGGCACGCGCGTGGAT TTCCGTCTCCAGGGCCATGCCCCGCTCGCCTTCAGCCTCGCGAACGCGCGGGGCTGCCAGGTCCGCGCCGACCGGCGCGC CATCGCCCCCGAACGCCAGGCTCCCGCCACGGCTGGCACCGACGTCCTCGCCTACCGACTGCCCCATGCTGCTGCGCAAA TCCAGCTCCAGTGCCCAGCCCGCTGA
Upstream 100 bases:
>100_bases AGGGAGTGGCCCCGGACCCACAGGGCAAGGCGCTCCGGCGGGCCCCGCGGGCTGCGGGCAAACCCTTAGACGTTTTTTCA TCCCATAAGACCAACGTGCC
Downstream 100 bases:
>100_bases GCGGCCCGTCCTGGCGCCGCCCTGGCTGATCACGCTGCTCGCCGGCATGGTGGGCGGCGGCCTGTGGCTGCTCTACCCGC GGCAGGATCTGGAACGCCGG
Product: putative signal peptide protein
Products: NA
Alternate protein names: Polysaccharide Deacetylase; Polysaccharide Transport System Component Protein; Glucanotransferase
Number of amino acids: Translated: 941; Mature: 940
Protein sequence:
>941_residues MSRRLRLLFFCLIAQLSAAVAWAASPAVALHYGPSAPLSELKVFDIVVVEPDHGYDPLAFAKTGSALYAYVSVAEVQSSR AYFRDIPEAWKMARNGAWNSEVIDQTPAEWPEFFATRVVAPLWEKGYRGFFLDTLDSYRLARQFDEAAQQQGLVRVIETL HQRFPGIRLILNRGFEIVPRVKDKVQMVAAESLFQGWNANTRRYEEVKASDREWLLGQLRTIHERDGLPVLAIDYVPPAD RELTRATAERIRALGFIPWVTDGQVSTVGVGSVELVPRRVLVVYYGGDTTALDYLDAHRFLQMPLNHMGYVVDYADVRKP LPEGILQDRYAGIVTWFSGYLPEGRMRTVSQWLLARLGERMPVAVMGNFGFALDRQFNEALGIKENASPPRGEQRVAVQD PMMGFELAVQPSSGSRFDWVTRNGAPALQPARALIEHRDARGGSYLGGAILPWGGFVVDPFVVTAVPGTDYARWMVDPFA FLTQALRLQPVPVPDITTENGRRLLFSHVDGDGFPSRAELAGSPNAGAVLLKEIFEKYTQVPQTMSVIEAEVAPHGLHPD TSAEMEDIARRMFRLPHVEIASHTYSHPFLWDRSVRHGVFSDNSEAAMSLDVPGYTMDLRREIVGSTDYINSRLAPPDKR VKILLWSGDTAPNAEALEITESAGLLNMNGGDTSITRTNPSLTAIGAFGIQKNGYLQVYAPITNENIYTNLWRGPYYGFE QVIQSFEMTDRPRRIKPVDIYYHVYSASKRAGLTALRKVYDWAMAQPLHPVFASEYIRKVRDFHTIAIARDGGGWRVRGD GELRTLRLPGALGTPQLASSQGVAGYRGGAEGPYVHLTGGSAWLRTEQASGTAARPVPYLYEANARLADWSAAADGTRVD FRLQGHAPLAFSLANARGCQVRADRRAIAPERQAPATAGTDVLAYRLPHAAAQIQLQCPAR
Sequences:
>Translated_941_residues MSRRLRLLFFCLIAQLSAAVAWAASPAVALHYGPSAPLSELKVFDIVVVEPDHGYDPLAFAKTGSALYAYVSVAEVQSSR AYFRDIPEAWKMARNGAWNSEVIDQTPAEWPEFFATRVVAPLWEKGYRGFFLDTLDSYRLARQFDEAAQQQGLVRVIETL HQRFPGIRLILNRGFEIVPRVKDKVQMVAAESLFQGWNANTRRYEEVKASDREWLLGQLRTIHERDGLPVLAIDYVPPAD RELTRATAERIRALGFIPWVTDGQVSTVGVGSVELVPRRVLVVYYGGDTTALDYLDAHRFLQMPLNHMGYVVDYADVRKP LPEGILQDRYAGIVTWFSGYLPEGRMRTVSQWLLARLGERMPVAVMGNFGFALDRQFNEALGIKENASPPRGEQRVAVQD PMMGFELAVQPSSGSRFDWVTRNGAPALQPARALIEHRDARGGSYLGGAILPWGGFVVDPFVVTAVPGTDYARWMVDPFA FLTQALRLQPVPVPDITTENGRRLLFSHVDGDGFPSRAELAGSPNAGAVLLKEIFEKYTQVPQTMSVIEAEVAPHGLHPD TSAEMEDIARRMFRLPHVEIASHTYSHPFLWDRSVRHGVFSDNSEAAMSLDVPGYTMDLRREIVGSTDYINSRLAPPDKR VKILLWSGDTAPNAEALEITESAGLLNMNGGDTSITRTNPSLTAIGAFGIQKNGYLQVYAPITNENIYTNLWRGPYYGFE QVIQSFEMTDRPRRIKPVDIYYHVYSASKRAGLTALRKVYDWAMAQPLHPVFASEYIRKVRDFHTIAIARDGGGWRVRGD GELRTLRLPGALGTPQLASSQGVAGYRGGAEGPYVHLTGGSAWLRTEQASGTAARPVPYLYEANARLADWSAAADGTRVD FRLQGHAPLAFSLANARGCQVRADRRAIAPERQAPATAGTDVLAYRLPHAAAQIQLQCPAR >Mature_940_residues SRRLRLLFFCLIAQLSAAVAWAASPAVALHYGPSAPLSELKVFDIVVVEPDHGYDPLAFAKTGSALYAYVSVAEVQSSRA YFRDIPEAWKMARNGAWNSEVIDQTPAEWPEFFATRVVAPLWEKGYRGFFLDTLDSYRLARQFDEAAQQQGLVRVIETLH QRFPGIRLILNRGFEIVPRVKDKVQMVAAESLFQGWNANTRRYEEVKASDREWLLGQLRTIHERDGLPVLAIDYVPPADR ELTRATAERIRALGFIPWVTDGQVSTVGVGSVELVPRRVLVVYYGGDTTALDYLDAHRFLQMPLNHMGYVVDYADVRKPL PEGILQDRYAGIVTWFSGYLPEGRMRTVSQWLLARLGERMPVAVMGNFGFALDRQFNEALGIKENASPPRGEQRVAVQDP MMGFELAVQPSSGSRFDWVTRNGAPALQPARALIEHRDARGGSYLGGAILPWGGFVVDPFVVTAVPGTDYARWMVDPFAF LTQALRLQPVPVPDITTENGRRLLFSHVDGDGFPSRAELAGSPNAGAVLLKEIFEKYTQVPQTMSVIEAEVAPHGLHPDT SAEMEDIARRMFRLPHVEIASHTYSHPFLWDRSVRHGVFSDNSEAAMSLDVPGYTMDLRREIVGSTDYINSRLAPPDKRV KILLWSGDTAPNAEALEITESAGLLNMNGGDTSITRTNPSLTAIGAFGIQKNGYLQVYAPITNENIYTNLWRGPYYGFEQ VIQSFEMTDRPRRIKPVDIYYHVYSASKRAGLTALRKVYDWAMAQPLHPVFASEYIRKVRDFHTIAIARDGGGWRVRGDG ELRTLRLPGALGTPQLASSQGVAGYRGGAEGPYVHLTGGSAWLRTEQASGTAARPVPYLYEANARLADWSAAADGTRVDF RLQGHAPLAFSLANARGCQVRADRRAIAPERQAPATAGTDVLAYRLPHAAAQIQLQCPAR
Specific function: Unknown
COG id: COG3868
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104427; Mature: 104296
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRRLRLLFFCLIAQLSAAVAWAASPAVALHYGPSAPLSELKVFDIVVVEPDHGYDPLAF CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHEEEEEEEEECCCCCCCCCEE AKTGSALYAYVSVAEVQSSRAYFRDIPEAWKMARNGAWNSEVIDQTPAEWPEFFATRVVA ECCCCEEEEEHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHH PLWEKGYRGFFLDTLDSYRLARQFDEAAQQQGLVRVIETLHQRFPGIRLILNRGFEIVPR HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCEEECC VKDKVQMVAAESLFQGWNANTRRYEEVKASDREWLLGQLRTIHERDGLPVLAIDYVPPAD HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC RELTRATAERIRALGFIPWVTDGQVSTVGVGSVELVPRRVLVVYYGGDTTALDYLDAHRF HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCCEEEEEEECCCCCCHHHHHHHHH LQMPLNHMGYVVDYADVRKPLPEGILQDRYAGIVTWFSGYLPEGRMRTVSQWLLARLGER HHCCHHHCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC MPVAVMGNFGFALDRQFNEALGIKENASPPRGEQRVAVQDPMMGFELAVQPSSGSRFDWV CCEEEEECCCCEECCCHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEE TRNGAPALQPARALIEHRDARGGSYLGGAILPWGGFVVDPFVVTAVPGTDYARWMVDPFA ECCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCEEEEECCCCCHHHHHHHHHH FLTQALRLQPVPVPDITTENGRRLLFSHVDGDGFPSRAELAGSPNAGAVLLKEIFEKYTQ HHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHC VPQTMSVIEAEVAPHGLHPDTSAEMEDIARRMFRLPHVEIASHTYSHPFLWDRSVRHGVF CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCEECCHHHCCCC SDNSEAAMSLDVPGYTMDLRREIVGSTDYINSRLAPPDKRVKILLWSGDTAPNAEALEIT CCCCCCEEEECCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEE ESAGLLNMNGGDTSITRTNPSLTAIGAFGIQKNGYLQVYAPITNENIYTNLWRGPYYGFE CCCCEEEECCCCCEEEECCCCEEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCHH QVIQSFEMTDRPRRIKPVDIYYHVYSASKRAGLTALRKVYDWAMAQPLHPVFASEYIRKV HHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH RDFHTIAIARDGGGWRVRGDGELRTLRLPGALGTPQLASSQGVAGYRGGAEGPYVHLTGG HCCEEEEEEECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC SAWLRTEQASGTAARPVPYLYEANARLADWSAAADGTRVDFRLQGHAPLAFSLANARGCQ CEEEEECCCCCCCCCCCCEEEECCCCEECCCCCCCCCEEEEEEECCCCEEEEECCCCCCE VRADRRAIAPERQAPATAGTDVLAYRLPHAAAQIQLQCPAR EECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCC >Mature Secondary Structure SRRLRLLFFCLIAQLSAAVAWAASPAVALHYGPSAPLSELKVFDIVVVEPDHGYDPLAF CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHEEEEEEEEECCCCCCCCCEE AKTGSALYAYVSVAEVQSSRAYFRDIPEAWKMARNGAWNSEVIDQTPAEWPEFFATRVVA ECCCCEEEEEHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHH PLWEKGYRGFFLDTLDSYRLARQFDEAAQQQGLVRVIETLHQRFPGIRLILNRGFEIVPR HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEECCCCEEECC VKDKVQMVAAESLFQGWNANTRRYEEVKASDREWLLGQLRTIHERDGLPVLAIDYVPPAD HHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC RELTRATAERIRALGFIPWVTDGQVSTVGVGSVELVPRRVLVVYYGGDTTALDYLDAHRF HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCCEEEEEEECCCCCCHHHHHHHHH LQMPLNHMGYVVDYADVRKPLPEGILQDRYAGIVTWFSGYLPEGRMRTVSQWLLARLGER HHCCHHHCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC MPVAVMGNFGFALDRQFNEALGIKENASPPRGEQRVAVQDPMMGFELAVQPSSGSRFDWV CCEEEEECCCCEECCCHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCEEEEE TRNGAPALQPARALIEHRDARGGSYLGGAILPWGGFVVDPFVVTAVPGTDYARWMVDPFA ECCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCEEECCEEEEECCCCCHHHHHHHHHH FLTQALRLQPVPVPDITTENGRRLLFSHVDGDGFPSRAELAGSPNAGAVLLKEIFEKYTQ HHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHC VPQTMSVIEAEVAPHGLHPDTSAEMEDIARRMFRLPHVEIASHTYSHPFLWDRSVRHGVF CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCEECCHHHCCCC SDNSEAAMSLDVPGYTMDLRREIVGSTDYINSRLAPPDKRVKILLWSGDTAPNAEALEIT CCCCCCEEEECCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEE ESAGLLNMNGGDTSITRTNPSLTAIGAFGIQKNGYLQVYAPITNENIYTNLWRGPYYGFE CCCCEEEECCCCCEEEECCCCEEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCHH QVIQSFEMTDRPRRIKPVDIYYHVYSASKRAGLTALRKVYDWAMAQPLHPVFASEYIRKV HHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH RDFHTIAIARDGGGWRVRGDGELRTLRLPGALGTPQLASSQGVAGYRGGAEGPYVHLTGG HCCEEEEEEECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC SAWLRTEQASGTAARPVPYLYEANARLADWSAAADGTRVDFRLQGHAPLAFSLANARGCQ CEEEEECCCCCCCCCCCCEEEECCCCEECCCCCCCCCEEEEEEECCCCEEEEECCCCCCE VRADRRAIAPERQAPATAGTDVLAYRLPHAAAQIQLQCPAR EECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA