Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120609617
Identifier: 120609617
GI number: 120609617
Start: 1006522
End: 1006917
Strand: Reverse
Name: 120609617
Synonym: Aave_0923
Alternate gene names: NA
Gene position: 1006917-1006522 (Counterclockwise)
Preceding gene: 120609618
Following gene: 120609616
Centisome position: 18.81
GC content: 71.21
Gene sequence:
>396_bases ATGACCCCGCGCGCGGCCACCGCTCGCCAGTGCGCTGGCCGGGCATCGGCCACGGGTTTCACGCTGGTCGAAGTGCTGGT GGCCCTGGCCATCGTGGCGATCGCGCTGACGGCCGGCACGCAGGCCACCTCGGCGCTGGCCCGCAATGCCGCGCGCCAGT CCGACGTGATGCTCGCGCACATCTGCGCGGAGAACGAACTCGTGAAGGTGCGGCTCGCACGCCAGATGCCTTCCATCGGG GACAGCACCGTGCCCTGCGAGCAGGCCGGCCTGCGCTATGACGTGGCGGTGGCCGTGCGGCCGACGCCCAATCCGCAGTT CCGCCGGGTCGATGCCCAGGTTTTCGATGCCACGGGGCCGGTGCTGCGGCTGTCCACCATCGTGGGGAGGTACTGA
Upstream 100 bases:
>100_bases TTGCACCGCAGCAGGTGGTGCTCGCGAGCCAGTCCCATCCCGGGCGCTCGGTGCGCGTGGCGACCGACGGCCTGCGTCCC TTCACCGCGGAGACGGTGCA
Downstream 100 bases:
>100_bases TGCCCCCCCTGAGCCGCCTTCGGCGCCTTCCCCCCGAGGGGGACGCCGCCAGTGGCCGGGCAAAGCCCGATCCACGGCGT CTGCCGGCATGGCCTGCTCC
Product: general secretion pathway protein I
Products: NA
Alternate protein names: Type II Secretion System Protein I/J
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MTPRAATARQCAGRASATGFTLVEVLVALAIVAIALTAGTQATSALARNAARQSDVMLAHICAENELVKVRLARQMPSIG DSTVPCEQAGLRYDVAVAVRPTPNPQFRRVDAQVFDATGPVLRLSTIVGRY
Sequences:
>Translated_131_residues MTPRAATARQCAGRASATGFTLVEVLVALAIVAIALTAGTQATSALARNAARQSDVMLAHICAENELVKVRLARQMPSIG DSTVPCEQAGLRYDVAVAVRPTPNPQFRRVDAQVFDATGPVLRLSTIVGRY >Mature_130_residues TPRAATARQCAGRASATGFTLVEVLVALAIVAIALTAGTQATSALARNAARQSDVMLAHICAENELVKVRLARQMPSIGD STVPCEQAGLRYDVAVAVRPTPNPQFRRVDAQVFDATGPVLRLSTIVGRY
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13833; Mature: 13702
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPRAATARQCAGRASATGFTLVEVLVALAIVAIALTAGTQATSALARNAARQSDVMLAH CCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEE ICAENELVKVRLARQMPSIGDSTVPCEQAGLRYDVAVAVRPTPNPQFRRVDAQVFDATGP ECCCCCHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEEEECCCCCCCEEHHHHHCCCCCC VLRLSTIVGRY HHHHHHHHCCC >Mature Secondary Structure TPRAATARQCAGRASATGFTLVEVLVALAIVAIALTAGTQATSALARNAARQSDVMLAH CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEE ICAENELVKVRLARQMPSIGDSTVPCEQAGLRYDVAVAVRPTPNPQFRRVDAQVFDATGP ECCCCCHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEEEECCCCCCCEEHHHHHCCCCCC VLRLSTIVGRY HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA