Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120609614
Identifier: 120609614
GI number: 120609614
Start: 1003275
End: 1004525
Strand: Reverse
Name: 120609614
Synonym: Aave_0920
Alternate gene names: NA
Gene position: 1004525-1003275 (Counterclockwise)
Preceding gene: 120609615
Following gene: 120609613
Centisome position: 18.77
GC content: 76.02
Gene sequence:
>1251_bases ATGAGCACCCTCGTCCTTTTCCTGCCCCTGGGCAGCGCCCCCGGGCCGGCCACCGAATACGGCTACACGCTGACCACGGA CGGCCATGCCGCTACCCGCCACGACAGCGCCCGCGCGTCCCTGCTGCCCGACCCGGGGCGGGCGGGCGAGGTGGTCGCCG TGGTGCCGATCCAGGCCCTGTCATGGCAGCGCGTCACGCTGCCCCAGGGCGCGCAGGCGCCGCGCCTGCGCGCGGTGCTC GAAGGGCTGCTGGAAGAGCGGCTGCTGGACGATCCCGCGCAGCTGCATTTCGCGCTGGAGCCGGGCGCGCGGCCGGGCGT GCCGGCCTGGGTGGCCGTGTGCGACCGGAACTGGCTGCGCGCGGCACTGCAGGCCCTGGAGGCCGCGGGCCGGCCGGTGC AGCGGGTGGTGCCCGAGTTCGCGCCGGGCACCGGGGAGGCACCTGCGTATTACGTGATCGGCACGCCCGAGGAACCGCTG CTGGTGGCCACGGGACAGGGCACGGAGGCCGTACCGTCCGTGCTGCCGCTGTCGCCTGCCGCCCTCCAGCTCACGGGCGT TGCGCGCGCCACGGACGCGTCCGGCGCGGACGGCGGTGAGTCCCTCCCGCCCCTGCAGGCGGAGCCGGCAGTGGCCCGGC TCGCCGAACAGATGACCGGCCGCCCCGCGGTACTGCACACGGCGAGCCAGCGCGCGCTGGTGGCGGCGCGCGGTACCTGG GACCTGGCGCAGTTCGAGTTCGCCAGCAACCGCCGCACGCGCACGCTGCGCAGGACGGCGACGGCCTTCGGCACCTTCGC GCGGGCGCCGCAATGGCGGGCCGCGCGCTGGGCCCTGGGCGTGTGCGTGGCCGCGCAGGTGGTCGGGCTGAACGCCTGGG CCTGGCAGGAGCGCCAGGCGCTCGCCGGCAAGCAGGCCGGCGTGCGCAACGCGCTGACCCAGACCTTTCCGCAGGTGCAG GTGGTGGTAGATGCGCCGGTCCAGATGGAACGCGAGGTGGCCCGGCTGCGGCAGCAGGCGGGCGGGGTGTCGGCGCGCGA CCTGGAGCCGATGCTCGCGTCCGCGGGCGGCGCGCTGCCCGCGGGGCGCCTGCCCACCGCGATCGACTACACCCCCGGGG AATTGCGGCTGCGGGGCGTCGAGCTGCAGCCCGAGGAACTGGCCACGACCAATGAACGCCTGGCCGCCGCCGGCTACCAG GCCAGCCTGCAGGATGGCGCGGTGCTGCTGCGCGAAGGGGCACGCCCATGA
Upstream 100 bases:
>100_bases CGGCGCGTTCGTGAGGAGCCCCGTTGCCGCACGATGACCTGCGCCGGGCCCCGGACCTGCCGTCATGCAGCGCCCCTAAA ATGGCCCGCGAATTCCATCC
Downstream 100 bases:
>100_bases AGCCGGCACGGTCTCCCTCCCCTTCCGCGGCCTCCGGATCCCGCACCGAAGTGCTGCGCGCACGCTGGAAAACGCTGGCT CCGCGCGAACAGTCGCTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: General Secretion Pathway Protein L
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MSTLVLFLPLGSAPGPATEYGYTLTTDGHAATRHDSARASLLPDPGRAGEVVAVVPIQALSWQRVTLPQGAQAPRLRAVL EGLLEERLLDDPAQLHFALEPGARPGVPAWVAVCDRNWLRAALQALEAAGRPVQRVVPEFAPGTGEAPAYYVIGTPEEPL LVATGQGTEAVPSVLPLSPAALQLTGVARATDASGADGGESLPPLQAEPAVARLAEQMTGRPAVLHTASQRALVAARGTW DLAQFEFASNRRTRTLRRTATAFGTFARAPQWRAARWALGVCVAAQVVGLNAWAWQERQALAGKQAGVRNALTQTFPQVQ VVVDAPVQMEREVARLRQQAGGVSARDLEPMLASAGGALPAGRLPTAIDYTPGELRLRGVELQPEELATTNERLAAAGYQ ASLQDGAVLLREGARP
Sequences:
>Translated_416_residues MSTLVLFLPLGSAPGPATEYGYTLTTDGHAATRHDSARASLLPDPGRAGEVVAVVPIQALSWQRVTLPQGAQAPRLRAVL EGLLEERLLDDPAQLHFALEPGARPGVPAWVAVCDRNWLRAALQALEAAGRPVQRVVPEFAPGTGEAPAYYVIGTPEEPL LVATGQGTEAVPSVLPLSPAALQLTGVARATDASGADGGESLPPLQAEPAVARLAEQMTGRPAVLHTASQRALVAARGTW DLAQFEFASNRRTRTLRRTATAFGTFARAPQWRAARWALGVCVAAQVVGLNAWAWQERQALAGKQAGVRNALTQTFPQVQ VVVDAPVQMEREVARLRQQAGGVSARDLEPMLASAGGALPAGRLPTAIDYTPGELRLRGVELQPEELATTNERLAAAGYQ ASLQDGAVLLREGARP >Mature_415_residues STLVLFLPLGSAPGPATEYGYTLTTDGHAATRHDSARASLLPDPGRAGEVVAVVPIQALSWQRVTLPQGAQAPRLRAVLE GLLEERLLDDPAQLHFALEPGARPGVPAWVAVCDRNWLRAALQALEAAGRPVQRVVPEFAPGTGEAPAYYVIGTPEEPLL VATGQGTEAVPSVLPLSPAALQLTGVARATDASGADGGESLPPLQAEPAVARLAEQMTGRPAVLHTASQRALVAARGTWD LAQFEFASNRRTRTLRRTATAFGTFARAPQWRAARWALGVCVAAQVVGLNAWAWQERQALAGKQAGVRNALTQTFPQVQV VVDAPVQMEREVARLRQQAGGVSARDLEPMLASAGGALPAGRLPTAIDYTPGELRLRGVELQPEELATTNERLAAAGYQA SLQDGAVLLREGARP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43894; Mature: 43763
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLVLFLPLGSAPGPATEYGYTLTTDGHAATRHDSARASLLPDPGRAGEVVAVVPIQAL CCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC SWQRVTLPQGAQAPRLRAVLEGLLEERLLDDPAQLHFALEPGARPGVPAWVAVCDRNWLR CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHCCHHHH AALQALEAAGRPVQRVVPEFAPGTGEAPAYYVIGTPEEPLLVATGQGTEAVPSVLPLSPA HHHHHHHHCCCCHHHHCHHCCCCCCCCCEEEEEECCCCCEEEEECCCCHHCCCCCCCCCH ALQLTGVARATDASGADGGESLPPLQAEPAVARLAEQMTGRPAVLHTASQRALVAARGTW HEEEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCCC DLAQFEFASNRRTRTLRRTATAFGTFARAPQWRAARWALGVCVAAQVVGLNAWAWQERQA CHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH LAGKQAGVRNALTQTFPQVQVVVDAPVQMEREVARLRQQAGGVSARDLEPMLASAGGALP HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHCCCCCC AGRLPTAIDYTPGELRLRGVELQPEELATTNERLAAAGYQASLQDGAVLLREGARP CCCCCCEEECCCCCEEEEECCCCHHHHHCCHHHHHHCCCCCCCCCCCCEECCCCCC >Mature Secondary Structure STLVLFLPLGSAPGPATEYGYTLTTDGHAATRHDSARASLLPDPGRAGEVVAVVPIQAL CEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC SWQRVTLPQGAQAPRLRAVLEGLLEERLLDDPAQLHFALEPGARPGVPAWVAVCDRNWLR CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCHHHHHHCCHHHH AALQALEAAGRPVQRVVPEFAPGTGEAPAYYVIGTPEEPLLVATGQGTEAVPSVLPLSPA HHHHHHHHCCCCHHHHCHHCCCCCCCCCEEEEEECCCCCEEEEECCCCHHCCCCCCCCCH ALQLTGVARATDASGADGGESLPPLQAEPAVARLAEQMTGRPAVLHTASQRALVAARGTW HEEEEECEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCCC DLAQFEFASNRRTRTLRRTATAFGTFARAPQWRAARWALGVCVAAQVVGLNAWAWQERQA CHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH LAGKQAGVRNALTQTFPQVQVVVDAPVQMEREVARLRQQAGGVSARDLEPMLASAGGALP HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHCCCCCC AGRLPTAIDYTPGELRLRGVELQPEELATTNERLAAAGYQASLQDGAVLLREGARP CCCCCCEEECCCCCEEEEECCCCHHHHHCCHHHHHHCCCCCCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA