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The map label for this gene is yggS [C]

Identifier: 120609338

GI number: 120609338

Start: 688056

End: 688781

Strand: Direct

Name: yggS [C]

Synonym: Aave_0638

Alternate gene names: 120609338

Gene position: 688056-688781 (Clockwise)

Preceding gene: 120609334

Following gene: 120609340

Centisome position: 12.85

GC content: 72.59

Gene sequence:

>726_bases
ATGACGACGATTGGTAACAACCTCCAAGGGGTCCTGGACCGCATCGCGCGAGCCTGCGCACAGGCCGGCCGCGAGCCGTC
CGGCGTGCGGCTGCTCGCCGTTTCCAAGACCTTCGGCGCCCCGTCCGTGCGCGAGGCGGCGCTGGCGGGGCAGCGGGCGT
TCGGCGAGAACTACATCCAGGAGGGCGTCGAGAAGATCGCTGCCCTGGGCCAGCCGGAGTCCGGCCTCGCGCATCCGCTG
GAGTGGCATTGCATCGGCCCCGTGCAGAGCAACAAGACCCGGCTGGTGGCGGAGCATTTCGACTGGGTGCACACGGTGGA
CCGCCTCAAGACGGCCGAGCGCCTGTCGCAGCAGCGGCCGGACCACCTGCCGGCACTGCAGGTGTGCATCCAGGTGAACG
TGGATGGCGGCGCCACCAAGGCCGGGCTGCCGCCGGACGAGGCGCCCGGCCTGGCGCTGGCCGTGGCGCGGCTGCCACGC
CTGAGGCTGCGGGGGCTCATGGCCATCCCCGAGCCGGCGCCGGACTTCGCGGCGCAGTTCGCGGTGCATGCGCAGGCGAA
GGCGCTCTTCGACCGCCTGCGCGCTTCCGGCGCGCCGGGCCTGGAGGACTTCGACACGCTCTCGCTGGGCATGACGGCCG
ACCTGGAGGCCGCCATCCACGCGGGCAGCACCATGGTGCGCGTGGGCAGCGGGATTTTCGGCGCGCGCAGCTATCCGGCG
CGCTGA

Upstream 100 bases:

>100_bases
AGGTGCAGGTCGGAGGCCTTGTTCTTCACGCTGAAGGCGAGCAGTTGGGTGATGTCCACGAAAAACCCTTGGTCGTTTGG
TACGCTTGAGAACAAACATT

Downstream 100 bases:

>100_bases
AAACCCGGGGGCGCGGCCCCGGGGAGCGGGCCTCAGCCCCGGAATTCCTCCACGCAGCCCAGGGTGTGCTCGACGTCCTC
GGCCCCCACGTCCAGGTGGG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTTIGNNLQGVLDRIARACAQAGREPSGVRLLAVSKTFGAPSVREAALAGQRAFGENYIQEGVEKIAALGQPESGLAHPL
EWHCIGPVQSNKTRLVAEHFDWVHTVDRLKTAERLSQQRPDHLPALQVCIQVNVDGGATKAGLPPDEAPGLALAVARLPR
LRLRGLMAIPEPAPDFAAQFAVHAQAKALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSYPA
R

Sequences:

>Translated_241_residues
MTTIGNNLQGVLDRIARACAQAGREPSGVRLLAVSKTFGAPSVREAALAGQRAFGENYIQEGVEKIAALGQPESGLAHPL
EWHCIGPVQSNKTRLVAEHFDWVHTVDRLKTAERLSQQRPDHLPALQVCIQVNVDGGATKAGLPPDEAPGLALAVARLPR
LRLRGLMAIPEPAPDFAAQFAVHAQAKALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSYPA
R
>Mature_240_residues
TTIGNNLQGVLDRIARACAQAGREPSGVRLLAVSKTFGAPSVREAALAGQRAFGENYIQEGVEKIAALGQPESGLAHPLE
WHCIGPVQSNKTRLVAEHFDWVHTVDRLKTAERLSQQRPDHLPALQVCIQVNVDGGATKAGLPPDEAPGLALAVARLPRL
RLRGLMAIPEPAPDFAAQFAVHAQAKALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSYPAR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=253, Percent_Identity=36.3636363636364, Blast_Score=121, Evalue=5e-28,
Organism=Escherichia coli, GI1789321, Length=241, Percent_Identity=53.9419087136929, Blast_Score=241, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI17533025, Length=255, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI45550861, Length=251, Percent_Identity=38.6454183266932, Blast_Score=122, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25561; Mature: 25429

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIGNNLQGVLDRIARACAQAGREPSGVRLLAVSKTFGAPSVREAALAGQRAFGENYIQ
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
EGVEKIAALGQPESGLAHPLEWHCIGPVQSNKTRLVAEHFDWVHTVDRLKTAERLSQQRP
HHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DHLPALQVCIQVNVDGGATKAGLPPDEAPGLALAVARLPRLRLRGLMAIPEPAPDFAAQF
CCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AVHAQAKALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSYPA
HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC
R
C
>Mature Secondary Structure 
TTIGNNLQGVLDRIARACAQAGREPSGVRLLAVSKTFGAPSVREAALAGQRAFGENYIQ
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
EGVEKIAALGQPESGLAHPLEWHCIGPVQSNKTRLVAEHFDWVHTVDRLKTAERLSQQRP
HHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DHLPALQVCIQVNVDGGATKAGLPPDEAPGLALAVARLPRLRLRGLMAIPEPAPDFAAQF
CCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AVHAQAKALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSYPA
HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]