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The map label for this gene is ganQ [H]

Identifier: 120609307

GI number: 120609307

Start: 664458

End: 665270

Strand: Direct

Name: ganQ [H]

Synonym: Aave_0607

Alternate gene names: 120609307

Gene position: 664458-665270 (Clockwise)

Preceding gene: 120609306

Following gene: 120609308

Centisome position: 12.41

GC content: 63.1

Gene sequence:

>813_bases
ATGCATGAGAACCGCTTCCGCAAGCGCACCCTGTTCCTGATCGCCTACCTCGTCTTCGCGCTCCTGCCCATCTACTGGAT
GGTGAACATGAGCTTCAAGACGAACTCCGAGATCCTCTCGACCTTCTCCTTCTGGCCCGAGCATTTCACCTGGGACAACT
ACCGGACCATCTTCACCGACGAGTCCTGGTATTCGGGCTACATCAACAGCCTGATCTACGTCGCCATCAACATGGTGATC
TCGCTCACCGTGGCGCTGCCGGCGGCCTACGCGTTCTCGCGCTACCAGTTCCTGGGCGACAAGCACGTCTTCTTCTGGCT
GCTCACCAACCGCATGACCCCGCCGGCCGTGTTCCTGCTGCCGTTCTTCCAGCTCTACACCACCGTGGGGCTGATGGACA
CGCACCTCGCCGTCGCGCTCGCCCACCTGCTGTTCAACGTGCCGCTCGCGGTCTGGATCCTGGAAGGCTTCATGAGCGGC
ATCCCGCGCGAGATCGACGAGACCGCCTACATCGACGGCTACAGCTTCCCGCGCTTCTTCCTCACCATCTTCCTGCCGCT
CATCAAGGCCGGCGTGGGCGTGGCCGCGTTCTTCTGCTTCATGTTCAGCTGGGTGGAGCTGCTGCTGGCCCGCACGCTCA
CCAGCGTGAACGCCAAGCCCATCGTCGCCACCATGACGCGCACCGTCAGCGCCTCGGGCATGGACTGGGCCACGCTCGCC
GCCGCCGGCGTGCTCACCATCGTGCCCGGCGCCATCGTGATCTGGTTCGTGCGGCACTACATCGCCAAAGGCTTCGCCAT
GGGGAGAGTATGA

Upstream 100 bases:

>100_bases
GCCTTCTCGCTGATCTACTTCCTCATCATCCTGCTGCTGTGCTTCATCCTCTACAACTGGATGCAGCGCGTGGGCACCGA
CACCGCCACGGAGGACGGCC

Downstream 100 bases:

>100_bases
GACACCCCCCTGCGCGGCTTCGCCGCTCCGTGCTTCCGCCAGAGGCGGCTGCCCTTCGTGCACGTCCAAGCCTGCGCAGG
CAGGCTCGGAGCCGCGGCAC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MHENRFRKRTLFLIAYLVFALLPIYWMVNMSFKTNSEILSTFSFWPEHFTWDNYRTIFTDESWYSGYINSLIYVAINMVI
SLTVALPAAYAFSRYQFLGDKHVFFWLLTNRMTPPAVFLLPFFQLYTTVGLMDTHLAVALAHLLFNVPLAVWILEGFMSG
IPREIDETAYIDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIVATMTRTVSASGMDWATLA
AAGVLTIVPGAIVIWFVRHYIAKGFAMGRV

Sequences:

>Translated_270_residues
MHENRFRKRTLFLIAYLVFALLPIYWMVNMSFKTNSEILSTFSFWPEHFTWDNYRTIFTDESWYSGYINSLIYVAINMVI
SLTVALPAAYAFSRYQFLGDKHVFFWLLTNRMTPPAVFLLPFFQLYTTVGLMDTHLAVALAHLLFNVPLAVWILEGFMSG
IPREIDETAYIDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIVATMTRTVSASGMDWATLA
AAGVLTIVPGAIVIWFVRHYIAKGFAMGRV
>Mature_270_residues
MHENRFRKRTLFLIAYLVFALLPIYWMVNMSFKTNSEILSTFSFWPEHFTWDNYRTIFTDESWYSGYINSLIYVAINMVI
SLTVALPAAYAFSRYQFLGDKHVFFWLLTNRMTPPAVFLLPFFQLYTTVGLMDTHLAVALAHLLFNVPLAVWILEGFMSG
IPREIDETAYIDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIVATMTRTVSASGMDWATLA
AAGVLTIVPGAIVIWFVRHYIAKGFAMGRV

Specific function: Could be part of a binding-protein-dependent transport system for arabinogalactan oligomers; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=275, Percent_Identity=26.9090909090909, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790464, Length=296, Percent_Identity=23.6486486486486, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30855; Mature: 30855

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHENRFRKRTLFLIAYLVFALLPIYWMVNMSFKTNSEILSTFSFWPEHFTWDNYRTIFTD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEC
ESWYSGYINSLIYVAINMVISLTVALPAAYAFSRYQFLGDKHVFFWLLTNRMTPPAVFLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH
PFFQLYTTVGLMDTHLAVALAHLLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFPRFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEECCCCHHHHH
LTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIVATMTRTVSASGMDWATLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
AAGVLTIVPGAIVIWFVRHYIAKGFAMGRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHENRFRKRTLFLIAYLVFALLPIYWMVNMSFKTNSEILSTFSFWPEHFTWDNYRTIFTD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEC
ESWYSGYINSLIYVAINMVISLTVALPAAYAFSRYQFLGDKHVFFWLLTNRMTPPAVFLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHH
PFFQLYTTVGLMDTHLAVALAHLLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFPRFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEECCCCHHHHH
LTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIVATMTRTVSASGMDWATLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
AAGVLTIVPGAIVIWFVRHYIAKGFAMGRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]