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The map label for this gene is yoaB [C]

Identifier: 120609275

GI number: 120609275

Start: 625054

End: 625431

Strand: Direct

Name: yoaB [C]

Synonym: Aave_0575

Alternate gene names: 120609275

Gene position: 625054-625431 (Clockwise)

Preceding gene: 120609274

Following gene: 120609276

Centisome position: 11.68

GC content: 64.55

Gene sequence:

>378_bases
ATGACTGCTTTCGCACTTCATCGCTTCCACACCAATCCTCGCATGAGCAAGGTGGTGGCGTTTGGCCCCCTCGTGTTTCT
GAGCGGGCAGACCGCCAGCGGCTCGCCCGCCACGTCCTTCGATGAGCAGATGCAGGAGGTTCTGGATCGCATCGATGCCC
GTCTGGCGGATGCGGGCTCGGACAAGCAATCGCTCCTGTCCGTGACGGTCTACCTGCGGAACATGGAAGACTTCGCGGCG
ATGAATGCTGCCTGGGAGCGGTGGATCGCCCCGGGAACCGCCCCGGCACGCTGCACCGTGGAGGGGCGCATAGCCTCCCC
ACACCTGCTGATCGAGATCTCCGCCATCGCCGCCACGTCGGCGTCCATCCACCCCTAA

Upstream 100 bases:

>100_bases
CCGGGTACGTCCGCCGCTGAAGCCGCTCCCACTCTCCGTCATCGCCAACTTCAACCAATGCGGCCAGCCCTGATCCTGGT
CGCCACTTCTCCCTCACCAC

Downstream 100 bases:

>100_bases
GATTGAAACGAGGCCTCCCCATGACCGAGATTTCCCACAACGCCCCCATCCCCCGACGTGCATGCCTGCGCTGGACTGCC
GGCGCGGGCATGGCATGGCT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MTAFALHRFHTNPRMSKVVAFGPLVFLSGQTASGSPATSFDEQMQEVLDRIDARLADAGSDKQSLLSVTVYLRNMEDFAA
MNAAWERWIAPGTAPARCTVEGRIASPHLLIEISAIAATSASIHP

Sequences:

>Translated_125_residues
MTAFALHRFHTNPRMSKVVAFGPLVFLSGQTASGSPATSFDEQMQEVLDRIDARLADAGSDKQSLLSVTVYLRNMEDFAA
MNAAWERWIAPGTAPARCTVEGRIASPHLLIEISAIAATSASIHP
>Mature_124_residues
TAFALHRFHTNPRMSKVVAFGPLVFLSGQTASGSPATSFDEQMQEVLDRIDARLADAGSDKQSLLSVTVYLRNMEDFAAM
NAAWERWIAPGTAPARCTVEGRIASPHLLIEISAIAATSASIHP

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=111, Percent_Identity=38.7387387387387, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13485; Mature: 13354

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFALHRFHTNPRMSKVVAFGPLVFLSGQTASGSPATSFDEQMQEVLDRIDARLADAGS
CCCEEEEEECCCCCHHHHHEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
DKQSLLSVTVYLRNMEDFAAMNAAWERWIAPGTAPARCTVEGRIASPHLLIEISAIAATS
CHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEEHEECC
ASIHP
CCCCC
>Mature Secondary Structure 
TAFALHRFHTNPRMSKVVAFGPLVFLSGQTASGSPATSFDEQMQEVLDRIDARLADAGS
CCEEEEEECCCCCHHHHHEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
DKQSLLSVTVYLRNMEDFAAMNAAWERWIAPGTAPARCTVEGRIASPHLLIEISAIAATS
CHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEEHEECC
ASIHP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA