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The map label for this gene is tnpR [H]

Identifier: 120609214

GI number: 120609214

Start: 556006

End: 556905

Strand: Direct

Name: tnpR [H]

Synonym: Aave_0512

Alternate gene names: 120609214

Gene position: 556006-556905 (Clockwise)

Preceding gene: 120609213

Following gene: 120609215

Centisome position: 10.39

GC content: 61.22

Gene sequence:

>900_bases
ATGCGCTGCGTCATCTATACCCGAAAGTCGGCCGACGAGACCGATCCTCAACTCAGTTCACTGCAGGTCCAACGCGACCT
GTGCGCTGCTTACATCGCGAGCCAAGCCTACGAAGGCTGGCACCTGCTCCCCGAACAATACGACGACGGCGGCTACTCGG
GGGCCACGCTCAAGCGGCCTGCGTTGCAGGCGCTGCTCACCCAGGTACGGCAGGGTGCGGTGGACATGGTCGTTCTCTAC
AAGATCGACCGCCTGTCGCGTTCGCTTCGCGACTTTCTCAATCTCATCTCCCTTTTCGAGTCCTATGACGTCACGTTCGT
GTCGGTCACGCAATCGCTGAACACGGCGACAAGCATTGGGAAGCTCTTGCTCAACGTGCTTCTGTCATTCGCCCAGTTCG
AGCGCGACATGACCTCCGAACGCCTGCGCGACTGGTTCGCGGGCGCTCGACAAAGAGGGCTTTGGAAGAGTGGCCGCCGC
CCCTTCGGTTACACGGTCCAAAAGGGATACCTGGACATCATGGAAACGGAAGCGGCGGCCGTCCGCTACGCGCACCGGCG
CTACGCCGCCATCGGGTCGGTGAAGCTGCTTGCCGACGAGATGCACCGCAAGGGATTTCGCAATCAGTACGGCGGTCCAC
TCAAAAAGTCTGCACTGACGCGGGTGCTCCGTAATCGCCTCTACTGCGGCGACCTTGTGCACCTGGGCAAGCCGCAGCCG
GGCCAGCATGTGGCGGTTATTTCAGAGGAGACATGGCGTGCAACGCAAGAGGCGATGGCGCAAAGCGGGGCGCGGCGATC
GGCCAGGAATCGCTATCCATTCATCAGCGTGCTGCGTGGCTTGATCTTCAACGAAAGCGAGCGAGCGCTCATCCACGTGG
GTGAAGTTGCCCCGGTTTGA

Upstream 100 bases:

>100_bases
GCATGTCGCCTTCACGGCGTGGATTTGAACAGCAAAAAGAGATCTGAGCGCACGCGCAGCAAGTGCTGAGCGTGCTCCTA
TTCTTTTGCCGGAGATCCCC

Downstream 100 bases:

>100_bases
CGGACACCTTACGCTGTAGAGCAAGGAGTTCGAAATGGGCAAGACAAGGCCGCCGTATCCGGCGGAGTTCCGAGAGCAGA
TAGTGGAGTTGGTGCGAGCT

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRCVIYTRKSADETDPQLSSLQVQRDLCAAYIASQAYEGWHLLPEQYDDGGYSGATLKRPALQALLTQVRQGAVDMVVLY
KIDRLSRSLRDFLNLISLFESYDVTFVSVTQSLNTATSIGKLLLNVLLSFAQFERDMTSERLRDWFAGARQRGLWKSGRR
PFGYTVQKGYLDIMETEAAAVRYAHRRYAAIGSVKLLADEMHRKGFRNQYGGPLKKSALTRVLRNRLYCGDLVHLGKPQP
GQHVAVISEETWRATQEAMAQSGARRSARNRYPFISVLRGLIFNESERALIHVGEVAPV

Sequences:

>Translated_299_residues
MRCVIYTRKSADETDPQLSSLQVQRDLCAAYIASQAYEGWHLLPEQYDDGGYSGATLKRPALQALLTQVRQGAVDMVVLY
KIDRLSRSLRDFLNLISLFESYDVTFVSVTQSLNTATSIGKLLLNVLLSFAQFERDMTSERLRDWFAGARQRGLWKSGRR
PFGYTVQKGYLDIMETEAAAVRYAHRRYAAIGSVKLLADEMHRKGFRNQYGGPLKKSALTRVLRNRLYCGDLVHLGKPQP
GQHVAVISEETWRATQEAMAQSGARRSARNRYPFISVLRGLIFNESERALIHVGEVAPV
>Mature_299_residues
MRCVIYTRKSADETDPQLSSLQVQRDLCAAYIASQAYEGWHLLPEQYDDGGYSGATLKRPALQALLTQVRQGAVDMVVLY
KIDRLSRSLRDFLNLISLFESYDVTFVSVTQSLNTATSIGKLLLNVLLSFAQFERDMTSERLRDWFAGARQRGLWKSGRR
PFGYTVQKGYLDIMETEAAAVRYAHRRYAAIGSVKLLADEMHRKGFRNQYGGPLKKSALTRVLRNRLYCGDLVHLGKPQP
GQHVAVISEETWRATQEAMAQSGARRSARNRYPFISVLRGLIFNESERALIHVGEVAPV

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=109, Percent_Identity=34.8623853211009, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 33811; Mature: 33811

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCVIYTRKSADETDPQLSSLQVQRDLCAAYIASQAYEGWHLLPEQYDDGGYSGATLKRP
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
ALQALLTQVRQGAVDMVVLYKIDRLSRSLRDFLNLISLFESYDVTFVSVTQSLNTATSIG
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHH
KLLLNVLLSFAQFERDMTSERLRDWFAGARQRGLWKSGRRPFGYTVQKGYLDIMETEAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHH
VRYAHRRYAAIGSVKLLADEMHRKGFRNQYGGPLKKSALTRVLRNRLYCGDLVHLGKPQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCC
GQHVAVISEETWRATQEAMAQSGARRSARNRYPFISVLRGLIFNESERALIHVGEVAPV
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure
MRCVIYTRKSADETDPQLSSLQVQRDLCAAYIASQAYEGWHLLPEQYDDGGYSGATLKRP
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
ALQALLTQVRQGAVDMVVLYKIDRLSRSLRDFLNLISLFESYDVTFVSVTQSLNTATSIG
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHH
KLLLNVLLSFAQFERDMTSERLRDWFAGARQRGLWKSGRRPFGYTVQKGYLDIMETEAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHH
VRYAHRRYAAIGSVKLLADEMHRKGFRNQYGGPLKKSALTRVLRNRLYCGDLVHLGKPQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCC
GQHVAVISEETWRATQEAMAQSGARRSARNRYPFISVLRGLIFNESERALIHVGEVAPV
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2997130 [H]