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The map label for this gene is ndoR [H]

Identifier: 120608872

GI number: 120608872

Start: 183480

End: 184475

Strand: Direct

Name: ndoR [H]

Synonym: Aave_0164

Alternate gene names: 120608872

Gene position: 183480-184475 (Clockwise)

Preceding gene: 120608870

Following gene: 120608873

Centisome position: 3.43

GC content: 71.29

Gene sequence:

>996_bases
ATGGAGTTGCATATCGAGCCGCTGGGCCGCGTGTTGCCCGTGGCGCCCGGCGCCAACCTGCTGGAAGTGCTGCGCGCCCA
CCAGATCCCCGTTTCGTACAGCTGCATGGCGGGCCGGTGCGGCACCTGCCGCTGCAAGGTCATCGCGGGCGAGGTGCTGG
ATTCCGGCCAGGCGCTGCGCATGCCGCCGCTGGGCGGCGATGGCGGGGCGCAGTACGTGATGGCCTGCCAGACGGTGCTG
AGCGAGTCCTGCACCATCGAGATCCCCGAGCCCGACGAGGTGGTGGTGCACACCGCCCGCACGCTCAAGGCCACGGTGAC
GGCCGTGGAAACGCTCACGCACGACATCCGCCGCCTGCGTCTGAAGCCGGCCAAGCCGCTGGATTTCTCGCCGGGGCAGT
ACGCGCAGCTGCAGTTCGGGCCGGGCCTGGCGCGGCCCTATTCGATGGCCGGGCTGCCGCATGACGGCGAACTCGAATTC
CATGTGCGGTTGGTCGAAGGCGGGCTCGTTTCGACGCACGTCGCGAGCGTGCTGGCGGTGGGCGATGCGGTGCGCGTGAG
CGGGCCGCTGGGTTCGGCCTACCTGCGCCGCAAGTACGAGGGGCCGATGCTCTGCGTGGCGGGCGGCACGGGGCTGGCGC
CGATCCTCTCCATCGTGCGCGGCGCGCTGGAGGCCGGCATGCCCAATCCGATCCACGTCTATGCCGGTGCGCGGTCTGCG
CGCGACGTCTATGGCCTGCAGTGGCTGGCCGACCTGCAGCAGCGCCATCCGCGGTTGCAGGTGCATGCCGTGGTGGCCGC
GGCCGATGCGGCGCCGGGCCAGCGCACGGGCCTCGTCACCGATGCGATCGCGCAGGACTGGCCCTCGCTGGAAGGCTGGC
GCGCCTACCTGTGCGGATCGCCGCCGATGGTGGAGGCGGTGTCGCTGCTGGCGCGCCAGCGCGGCATCGCGCCCGAGCAT
CTCTATGCGGACGCTTTCTACGCCAGTACGCCCTGA

Upstream 100 bases:

>100_bases
ATTCAAGCCATTAATGCTGAGTATTCATGCCATTCTATTGGCTGATGAAACAATCGCGGGAATGATCGGGGCCATAACGA
AAACCTGGAGACAGTCCCCG

Downstream 100 bases:

>100_bases
CACATCCCGAGGAGCCAACGACATGAGCACGCCCCACCCCGTCTTCCCATTGCAGCCCGTCTGGGAGAGCCCCGGCACCC
ATCGCGTGCCGTTCGCGGCC

Product: oxidoreductase FAD-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MELHIEPLGRVLPVAPGANLLEVLRAHQIPVSYSCMAGRCGTCRCKVIAGEVLDSGQALRMPPLGGDGGAQYVMACQTVL
SESCTIEIPEPDEVVVHTARTLKATVTAVETLTHDIRRLRLKPAKPLDFSPGQYAQLQFGPGLARPYSMAGLPHDGELEF
HVRLVEGGLVSTHVASVLAVGDAVRVSGPLGSAYLRRKYEGPMLCVAGGTGLAPILSIVRGALEAGMPNPIHVYAGARSA
RDVYGLQWLADLQQRHPRLQVHAVVAAADAAPGQRTGLVTDAIAQDWPSLEGWRAYLCGSPPMVEAVSLLARQRGIAPEH
LYADAFYASTP

Sequences:

>Translated_331_residues
MELHIEPLGRVLPVAPGANLLEVLRAHQIPVSYSCMAGRCGTCRCKVIAGEVLDSGQALRMPPLGGDGGAQYVMACQTVL
SESCTIEIPEPDEVVVHTARTLKATVTAVETLTHDIRRLRLKPAKPLDFSPGQYAQLQFGPGLARPYSMAGLPHDGELEF
HVRLVEGGLVSTHVASVLAVGDAVRVSGPLGSAYLRRKYEGPMLCVAGGTGLAPILSIVRGALEAGMPNPIHVYAGARSA
RDVYGLQWLADLQQRHPRLQVHAVVAAADAAPGQRTGLVTDAIAQDWPSLEGWRAYLCGSPPMVEAVSLLARQRGIAPEH
LYADAFYASTP
>Mature_331_residues
MELHIEPLGRVLPVAPGANLLEVLRAHQIPVSYSCMAGRCGTCRCKVIAGEVLDSGQALRMPPLGGDGGAQYVMACQTVL
SESCTIEIPEPDEVVVHTARTLKATVTAVETLTHDIRRLRLKPAKPLDFSPGQYAQLQFGPGLARPYSMAGLPHDGELEF
HVRLVEGGLVSTHVASVLAVGDAVRVSGPLGSAYLRRKYEGPMLCVAGGTGLAPILSIVRGALEAGMPNPIHVYAGARSA
RDVYGLQWLADLQQRHPRLQVHAVVAAADAAPGQRTGLVTDAIAQDWPSLEGWRAYLCGSPPMVEAVSLLARQRGIAPEH
LYADAFYASTP

Specific function: Component of naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol. Transfers electrons from ferredoxin (ndoA) to NADH [H]

COG id: COG0543

COG function: function code HC; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding FR-type domain [H]

Homologues:

Organism=Escherichia coli, GI2367314, Length=228, Percent_Identity=34.2105263157895, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787658, Length=242, Percent_Identity=25.2066115702479, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR017927
- InterPro:   IPR001041
- InterPro:   IPR001709
- InterPro:   IPR008333
- InterPro:   IPR001433
- InterPro:   IPR001221
- InterPro:   IPR017938 [H]

Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]

EC number: =1.18.1.3 [H]

Molecular weight: Translated: 35197; Mature: 35197

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELHIEPLGRVLPVAPGANLLEVLRAHQIPVSYSCMAGRCGTCRCKVIAGEVLDSGQALR
CEEECCCCCCEECCCCCHHHHHHHHHHCCCCEEHHHCCCCCCEEEEEEEHHHHCCCCEEE
MPPLGGDGGAQYVMACQTVLSESCTIEIPEPDEVVVHTARTLKATVTAVETLTHDIRRLR
CCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
LKPAKPLDFSPGQYAQLQFGPGLARPYSMAGLPHDGELEFHVRLVEGGLVSTHVASVLAV
CCCCCCCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
GDAVRVSGPLGSAYLRRKYEGPMLCVAGGTGLAPILSIVRGALEAGMPNPIHVYAGARSA
CCCEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
RDVYGLQWLADLQQRHPRLQVHAVVAAADAAPGQRTGLVTDAIAQDWPSLEGWRAYLCGS
HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCC
PPMVEAVSLLARQRGIAPEHLYADAFYASTP
CCHHHHHHHHHHHHCCCHHHHHHCCEECCCC
>Mature Secondary Structure
MELHIEPLGRVLPVAPGANLLEVLRAHQIPVSYSCMAGRCGTCRCKVIAGEVLDSGQALR
CEEECCCCCCEECCCCCHHHHHHHHHHCCCCEEHHHCCCCCCEEEEEEEHHHHCCCCEEE
MPPLGGDGGAQYVMACQTVLSESCTIEIPEPDEVVVHTARTLKATVTAVETLTHDIRRLR
CCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
LKPAKPLDFSPGQYAQLQFGPGLARPYSMAGLPHDGELEFHVRLVEGGLVSTHVASVLAV
CCCCCCCCCCCCCEEEEEECCCCCCCCHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
GDAVRVSGPLGSAYLRRKYEGPMLCVAGGTGLAPILSIVRGALEAGMPNPIHVYAGARSA
CCCEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
RDVYGLQWLADLQQRHPRLQVHAVVAAADAAPGQRTGLVTDAIAQDWPSLEGWRAYLCGS
HHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCC
PPMVEAVSLLARQRGIAPEHLYADAFYASTP
CCHHHHHHHHHHHHCCCHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8486285; 8787402; 2294092 [H]