Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
---|---|
Accession | NC_008750 |
Length | 4,708,380 |
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The map label for this gene is folM [H]
Identifier: 120597555
GI number: 120597555
Start: 803192
End: 803911
Strand: Direct
Name: folM [H]
Synonym: Sputw3181_0724
Alternate gene names: 120597555
Gene position: 803192-803911 (Clockwise)
Preceding gene: 120597553
Following gene: 120597558
Centisome position: 17.06
GC content: 46.81
Gene sequence:
>720_bases ATGACATCTCCCATCATCATCACAGGCGTGGGTAAACGCATAGGTTACGCCTTAGCCAAACATCTTCTTGCCCAAGGTCA TAGTGTGATTGGCACCTATCGTAGCCATTATCCGAGTATTGATAAGCTGCGGGTTTTGGGCGCGACTATAATCCAATGTG ACTTTTACGACAATGTTCAGGTACAAGGCTTAATTGATCAATTGAGCCAGTATCCAAAGATCCGCGCCATTATCCATAAC GCCTCGGATTGGTTGGCGGATAGCAGTCAAACCTATACTGCCAGCGAAGTGATACAGCGGATGATGCAGGTGCACGTAAG CGTACCTTATCAATTGAATTTGGCGTTAGCATCGCAGTTGCAAGCAGGTGCAGAAGAGGAGATTGGTGCCAGCGATATCA TCCATATCACCGACTATGTGGCCGAAAAGGGCAGTGCTAAACATATCGCTTATGCCGGCAGTAAAGCGGCGCTACATAAT TTAACTTTGTCCTTTGCGGCTAAATTCGCCCCCGAAGTGAAAGTCAATTCGATTGCGCCAGCGATGATCCTATTTAATCA AGGCGATGATGAAGCCTATCAGCAAAAAACCTTAGCTAAAGCACTACTGCCAAAAGAGGCGGGGAATGAAGAGATTATCG ATTTAGTGGAATATCTGCTAAATAGCCGCTATGTCACGGGGCGCAGCCATCATGTCGATGGTGGTCGGCATTTAAGGTAA
Upstream 100 bases:
>100_bases TGAGTGCAGTAACATCTTGGTTATTCATCAGTTTAACTTGATTGCTGATTTTTAAGTGAACAAGGTAAAGCCTGACAAAT AACGACTCAAAAGGATAGGT
Downstream 100 bases:
>100_bases AAAAGAATCTAGATTTTAGGTCCTAGGCCCTAGAATCTAATTACCTAGCACTTTCTTTTTTAAAACGTCAGCACACGACT TGGGGTGATGATAATAGGTA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: DHFR [H]
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MTSPIIITGVGKRIGYALAKHLLAQGHSVIGTYRSHYPSIDKLRVLGATIIQCDFYDNVQVQGLIDQLSQYPKIRAIIHN ASDWLADSSQTYTASEVIQRMMQVHVSVPYQLNLALASQLQAGAEEEIGASDIIHITDYVAEKGSAKHIAYAGSKAALHN LTLSFAAKFAPEVKVNSIAPAMILFNQGDDEAYQQKTLAKALLPKEAGNEEIIDLVEYLLNSRYVTGRSHHVDGGRHLR
Sequences:
>Translated_239_residues MTSPIIITGVGKRIGYALAKHLLAQGHSVIGTYRSHYPSIDKLRVLGATIIQCDFYDNVQVQGLIDQLSQYPKIRAIIHN ASDWLADSSQTYTASEVIQRMMQVHVSVPYQLNLALASQLQAGAEEEIGASDIIHITDYVAEKGSAKHIAYAGSKAALHN LTLSFAAKFAPEVKVNSIAPAMILFNQGDDEAYQQKTLAKALLPKEAGNEEIIDLVEYLLNSRYVTGRSHHVDGGRHLR >Mature_238_residues TSPIIITGVGKRIGYALAKHLLAQGHSVIGTYRSHYPSIDKLRVLGATIIQCDFYDNVQVQGLIDQLSQYPKIRAIIHNA SDWLADSSQTYTASEVIQRMMQVHVSVPYQLNLALASQLQAGAEEEIGASDIIHITDYVAEKGSAKHIAYAGSKAALHNL TLSFAAKFAPEVKVNSIAPAMILFNQGDDEAYQQKTLAKALLPKEAGNEEIIDLVEYLLNSRYVTGRSHHVDGGRHLR
Specific function: Catalyzes the reduction of dihydrofolate to tetrahydrofolate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family. FolM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787891, Length=237, Percent_Identity=55.2742616033755, Blast_Score=245, Evalue=2e-66, Organism=Drosophila melanogaster, GI24643142, Length=238, Percent_Identity=26.4705882352941, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=25.4980079681275, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.5.1.3 [H]
Molecular weight: Translated: 26208; Mature: 26077
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPIIITGVGKRIGYALAKHLLAQGHSVIGTYRSHYPSIDKLRVLGATIIQCDFYDNVQ CCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHEEEEEECCCCCH VQGLIDQLSQYPKIRAIIHNASDWLADSSQTYTASEVIQRMMQVHVSVPYQLNLALASQL HHHHHHHHHHCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHH QAGAEEEIGASDIIHITDYVAEKGSAKHIAYAGSKAALHNLTLSFAAKFAPEVKVNSIAP HCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEECCCCC AMILFNQGDDEAYQQKTLAKALLPKEAGNEEIIDLVEYLLNSRYVTGRSHHVDGGRHLR EEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCC >Mature Secondary Structure TSPIIITGVGKRIGYALAKHLLAQGHSVIGTYRSHYPSIDKLRVLGATIIQCDFYDNVQ CCCEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHEEEEEECCCCCH VQGLIDQLSQYPKIRAIIHNASDWLADSSQTYTASEVIQRMMQVHVSVPYQLNLALASQL HHHHHHHHHHCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHH QAGAEEEIGASDIIHITDYVAEKGSAKHIAYAGSKAALHNLTLSFAAKFAPEVKVNSIAP HCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEECCCCC AMILFNQGDDEAYQQKTLAKALLPKEAGNEEIIDLVEYLLNSRYVTGRSHHVDGGRHLR EEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA