Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
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Accession | NC_008750 |
Length | 4,708,380 |
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The map label for this gene is 120597313
Identifier: 120597313
GI number: 120597313
Start: 523121
End: 524134
Strand: Direct
Name: 120597313
Synonym: Sputw3181_0482
Alternate gene names: NA
Gene position: 523121-524134 (Clockwise)
Preceding gene: 120597312
Following gene: 120597314
Centisome position: 11.11
GC content: 42.5
Gene sequence:
>1014_bases ATGATCAAAGGGATCGGTGAGTCGCTTACTCAATTACACCAAAGTCAGACGGTAACGTCTCAATATGTTGCACCAATATC GGCTTCACCGCGCAGCATCCCTAAGGCGCGGCCTATCCCTAAACATAGGTTAGAAGCCTATGGTCGTTGGGCTAAAGTGA CTCAAGAGCAGCATAATATCAGTGCTTCGCAAGTTGTATTACAGAGTTTAATCTTAGCTAAGCAGTTAATGGGGCAGCTT AATAAGCAGTTACAAACCTGCCTATTTAATAAGAATACGATTATTGAGGATACCTTAAACAGAGCTGAAGAAGTGAGGCG TCAACTTATTGAAATAAAACCTCACTACCAAGGCAAGCGTTTACTCGATCATCATCTCAATTTGATTTCAGTATCCCAGC CTGCCGCTTTGCATCTTTTTAAGTTTAGGCGGGTGGATCTCACCTCGCCTAAGAACCGCGATGAACGCATAACGCTATTT ACTGAAAAGCAAACATTGCATTTGCTTTTACCAGCAAATAAAAATCGCCTAGCGCTACAAGAGATAATAGGGCCCGTATT AGCTTCGATCGGGATTGGTATTGATCGTTCATCCCCCCATGACACTGTATTTATGGCGCAGGATGACACTTGGACAAAGC TTTGCGGTGGGATTTTAATGGTCGGTGAGGGCCAAAGACTCCCTGCTGGTGAGCCAAGAAATATTCCACTTGAAGAGATA TTTAGTTGGCAAGATCCCCGTGAATGGCATTTTGATAATACTGAAAAGTTAAAAATCACCTTAGCTAAAATCGCTAAGGT TGAGAAAAAAGTGACATTACAAATAGAGGAAATTAACGCTTCCCATCGCTTATTACTCGCAAAGGTTAAGCAATTGACCG CATCCAGTCAGCCTAAGGTTGAACTCCAGCATTTGCATAAATTTATGCAACCCTATCCTTTTTCCTATCAAGTGACATCT TTAATGGCGCAGGGAAATACCAACCGTGAGCAAGTTAGCGCATTGCTACTCTAA
Upstream 100 bases:
>100_bases GGAGTTCAATGTGAAGCTAACCGCATTAAAAATCACTCAACAAACGTTTGTGCAGATTAGTCAATTGTCCCTTTTCAATC ATATGTAGGTAATGAGTTAA
Downstream 100 bases:
>100_bases TTTTTTGAGTTGAATCCCAAGTTAGCGCATTTAATTTTTGAAAATACGATTTTGGGTTTTAGTGTTGAGGGATTTGTGTC GCCTTATTGAGTTATGCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MIKGIGESLTQLHQSQTVTSQYVAPISASPRSIPKARPIPKHRLEAYGRWAKVTQEQHNISASQVVLQSLILAKQLMGQL NKQLQTCLFNKNTIIEDTLNRAEEVRRQLIEIKPHYQGKRLLDHHLNLISVSQPAALHLFKFRRVDLTSPKNRDERITLF TEKQTLHLLLPANKNRLALQEIIGPVLASIGIGIDRSSPHDTVFMAQDDTWTKLCGGILMVGEGQRLPAGEPRNIPLEEI FSWQDPREWHFDNTEKLKITLAKIAKVEKKVTLQIEEINASHRLLLAKVKQLTASSQPKVELQHLHKFMQPYPFSYQVTS LMAQGNTNREQVSALLL
Sequences:
>Translated_337_residues MIKGIGESLTQLHQSQTVTSQYVAPISASPRSIPKARPIPKHRLEAYGRWAKVTQEQHNISASQVVLQSLILAKQLMGQL NKQLQTCLFNKNTIIEDTLNRAEEVRRQLIEIKPHYQGKRLLDHHLNLISVSQPAALHLFKFRRVDLTSPKNRDERITLF TEKQTLHLLLPANKNRLALQEIIGPVLASIGIGIDRSSPHDTVFMAQDDTWTKLCGGILMVGEGQRLPAGEPRNIPLEEI FSWQDPREWHFDNTEKLKITLAKIAKVEKKVTLQIEEINASHRLLLAKVKQLTASSQPKVELQHLHKFMQPYPFSYQVTS LMAQGNTNREQVSALLL >Mature_337_residues MIKGIGESLTQLHQSQTVTSQYVAPISASPRSIPKARPIPKHRLEAYGRWAKVTQEQHNISASQVVLQSLILAKQLMGQL NKQLQTCLFNKNTIIEDTLNRAEEVRRQLIEIKPHYQGKRLLDHHLNLISVSQPAALHLFKFRRVDLTSPKNRDERITLF TEKQTLHLLLPANKNRLALQEIIGPVLASIGIGIDRSSPHDTVFMAQDDTWTKLCGGILMVGEGQRLPAGEPRNIPLEEI FSWQDPREWHFDNTEKLKITLAKIAKVEKKVTLQIEEINASHRLLLAKVKQLTASSQPKVELQHLHKFMQPYPFSYQVTS LMAQGNTNREQVSALLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38313; Mature: 38313
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKGIGESLTQLHQSQTVTSQYVAPISASPRSIPKARPIPKHRLEAYGRWAKVTQEQHNI CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC SASQVVLQSLILAKQLMGQLNKQLQTCLFNKNTIIEDTLNRAEEVRRQLIEIKPHYQGKR CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH LLDHHLNLISVSQPAALHLFKFRRVDLTSPKNRDERITLFTEKQTLHLLLPANKNRLALQ HHHHCCCEEECCCCHHHHHHHHHEECCCCCCCCCCEEEEEEECCEEEEEECCCCCCHHHH EIIGPVLASIGIGIDRSSPHDTVFMAQDDTWTKLCGGILMVGEGQRLPAGEPRNIPLEEI HHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHCCEEEECCCCCCCCCCCCCCCHHHH FSWQDPREWHFDNTEKLKITLAKIAKVEKKVTLQIEEINASHRLLLAKVKQLTASSQPKV HCCCCCCCCCCCCCCEEEEEHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCCH ELQHLHKFMQPYPFSYQVTSLMAQGNTNREQVSALLL HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCC >Mature Secondary Structure MIKGIGESLTQLHQSQTVTSQYVAPISASPRSIPKARPIPKHRLEAYGRWAKVTQEQHNI CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC SASQVVLQSLILAKQLMGQLNKQLQTCLFNKNTIIEDTLNRAEEVRRQLIEIKPHYQGKR CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH LLDHHLNLISVSQPAALHLFKFRRVDLTSPKNRDERITLFTEKQTLHLLLPANKNRLALQ HHHHCCCEEECCCCHHHHHHHHHEECCCCCCCCCCEEEEEEECCEEEEEECCCCCCHHHH EIIGPVLASIGIGIDRSSPHDTVFMAQDDTWTKLCGGILMVGEGQRLPAGEPRNIPLEEI HHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHCCEEEECCCCCCCCCCCCCCCHHHH FSWQDPREWHFDNTEKLKITLAKIAKVEKKVTLQIEEINASHRLLLAKVKQLTASSQPKV HCCCCCCCCCCCCCCEEEEEHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCCH ELQHLHKFMQPYPFSYQVTSLMAQGNTNREQVSALLL HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA