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The map label for this gene is epsC [H]

Identifier: 119947058

GI number: 119947058

Start: 4273704

End: 4275611

Strand: Reverse

Name: epsC [H]

Synonym: Ping_3456

Alternate gene names: 119947058

Gene position: 4275611-4273704 (Counterclockwise)

Preceding gene: 119947059

Following gene: 119947057

Centisome position: 93.77

GC content: 41.88

Gene sequence:

>1908_bases
ATGTTCATTATTAACAAAATCTTCTCAATGCCCCGTATCTATAAACGAATCGTTAGTATTTTTGTTGATACCGTCTTTAT
TTTTTCAGCTTTTGTGGGAGCTTTTTATACTCGCTTAGAATCGGTTCCGTTTCTTGATAGCAGCAAATATTGGCAAGTAC
TCATGCTGCTCGTCCTCAGCACTCTTATTTTCTTTATCCGCGTCGGTCTGTACCGTGCAATATTACGCTACTTAAGTGTT
CATGCATTATTCACTATTGTTCTTAGCTGTGCAGTGTCAGCTCTTTTTCTGGTTGTTTTGGGATATTTTTTTGAGGTGTT
CCTGCCCCGGGCTATTCCTATTATTTATTTCGCTTATCTTGTTTTACTTAGTGGAGGCTCAAGGTTATTGGTGCGGGTGC
TTGTCTCTCAGCATAATACCAAACAGAAAGATCGGGTTATTATTTATGGGGCGGGTGATTCAGGGCGACAATTAGCTAAT
TTACTGCGCCATGGTAATGAATTTCACCCCGTTGCTTTTATTGATGATGAACAAAAACTTTTCAAAAACGTTGTTAATGG
TTTGACTGTCTATAACAGTAAAGATTTAAAGCGTTTAATATCGCGAATGCAGATCAATAAAGTCTTGTTAGCTATGCCAA
GAGCTAAGCGATCGCAGCGTAAGGCGATCATTAACACTTTGACCGAGTTGCGTGTTGAGGTGAAAAGTGTGCCAGCTTTT
GAAGAAATAATAAATGGTTCAGCATCAATGGATCAGCTTTGTGATGTGGCGATTGAAGATCTTTTAGGGCGTGATTGTGT
TTTGGCTAAACCAGAGCTCCTTAACGCAAATATTAAAAATAAAGTGGTTATGGTGACGGGGGCGGGAGGCTCGATAGGAT
CTGAGCTTTGCCGGCAGATTGTGCAACAGGCACCAAAATCTTTGATATTATTTGAGCTGTCCGAGTACGGCTTATACCAG
ATAGATAAAGAGTTATCGGAGTTAGTGGCAGGGCAAAACTTAACCGTTCAAATTATTCCTTTGTTAGGCTCAGTGCAGCG
TAAGAATCGCTTACAAACAGTACTGGAAAGTTTTGCAGTACAAACGCTCTATCATGCCGCCGCTTATAAGCATGTGCCAA
TGGTTGAACACAATGTCGTCGAAGGTGTGCGTAATAATATTTTTGGCACTTATTACACCGCATTGGCCGCCATTGCAGCA
AAAGTGGAGTCATTCGTTTTGATTTCGACGGATAAAGCAGTTCGTCCAACTAATGTAATGGGCACAACAAAACGCATGGC
AGAGTTGACACTGCAGTCGTTAGCGGCAGAAGAACATAACACGCGTTTTTGTATGGTACGTTTTGGTAATGTGTTGGGCT
CTTCAGGCTCCGTTATTCCACTGTTTAAACGGCAAATAGCGGAAGGTGAATATGTCACCGTGACACACCCTGATATTATT
CGTTATTTTATGACGATTCCTGAGGCCGCGCAATTAGTCATTCAGGCTGGCGCCATGGGCAAAGGGGGGGATGTCTTTGT
GCTGGATATGGGCGAGCCGGTGAAAATTGTTGATCTTGCAAAAAATCTGATCCATTTGTCAGGTTTAGAGGTGAAAACAT
CGCAAAACCCCTACGGTGATATTGAGATTAAGTTTACTGGCCTGCGTCCAGGTGAGAAACTTTTTGAAGAGTTATTGATT
GGTGATAATGTCGAAAAAACAGCGCATCAGTGTATTATGACTGCGAATGAAAATTTCTTACCCTACCCTGAGTATGAAAA
AATTCTGCAGCGGCTTGATCAAGCCTGTCATGAGTTTGATCATGAAAGCATTCGGGAAATTTTATTGGCAACGCCTGCTG
GTTTTAACCCAACAGATGGCATCGGTGATCTGGTTTGGAAGGCGAAAAAGCAACAGGGCATAAATTGA

Upstream 100 bases:

>100_bases
AATTCACATCCTTTGAGATTCATTTATACTGTGTTTTTTTGATTGTGTCCGACATTTTTATGGTCAGGTGTTAATCTTTA
TTTCTATTTTCTAGGACGTT

Downstream 100 bases:

>100_bases
ACGACAGTTCAGTCTTATTAACGGGTCAATCTTCACTTATTGCCGATAGCGAATAATAATTGAAATCGTATATTTAATTC
ATTAAGACTTCCGAATAACT

Product: nucleotide sugar epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MFIINKIFSMPRIYKRIVSIFVDTVFIFSAFVGAFYTRLESVPFLDSSKYWQVLMLLVLSTLIFFIRVGLYRAILRYLSV
HALFTIVLSCAVSALFLVVLGYFFEVFLPRAIPIIYFAYLVLLSGGSRLLVRVLVSQHNTKQKDRVIIYGAGDSGRQLAN
LLRHGNEFHPVAFIDDEQKLFKNVVNGLTVYNSKDLKRLISRMQINKVLLAMPRAKRSQRKAIINTLTELRVEVKSVPAF
EEIINGSASMDQLCDVAIEDLLGRDCVLAKPELLNANIKNKVVMVTGAGGSIGSELCRQIVQQAPKSLILFELSEYGLYQ
IDKELSELVAGQNLTVQIIPLLGSVQRKNRLQTVLESFAVQTLYHAAAYKHVPMVEHNVVEGVRNNIFGTYYTALAAIAA
KVESFVLISTDKAVRPTNVMGTTKRMAELTLQSLAAEEHNTRFCMVRFGNVLGSSGSVIPLFKRQIAEGEYVTVTHPDII
RYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIHLSGLEVKTSQNPYGDIEIKFTGLRPGEKLFEELLI
GDNVEKTAHQCIMTANENFLPYPEYEKILQRLDQACHEFDHESIREILLATPAGFNPTDGIGDLVWKAKKQQGIN

Sequences:

>Translated_635_residues
MFIINKIFSMPRIYKRIVSIFVDTVFIFSAFVGAFYTRLESVPFLDSSKYWQVLMLLVLSTLIFFIRVGLYRAILRYLSV
HALFTIVLSCAVSALFLVVLGYFFEVFLPRAIPIIYFAYLVLLSGGSRLLVRVLVSQHNTKQKDRVIIYGAGDSGRQLAN
LLRHGNEFHPVAFIDDEQKLFKNVVNGLTVYNSKDLKRLISRMQINKVLLAMPRAKRSQRKAIINTLTELRVEVKSVPAF
EEIINGSASMDQLCDVAIEDLLGRDCVLAKPELLNANIKNKVVMVTGAGGSIGSELCRQIVQQAPKSLILFELSEYGLYQ
IDKELSELVAGQNLTVQIIPLLGSVQRKNRLQTVLESFAVQTLYHAAAYKHVPMVEHNVVEGVRNNIFGTYYTALAAIAA
KVESFVLISTDKAVRPTNVMGTTKRMAELTLQSLAAEEHNTRFCMVRFGNVLGSSGSVIPLFKRQIAEGEYVTVTHPDII
RYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIHLSGLEVKTSQNPYGDIEIKFTGLRPGEKLFEELLI
GDNVEKTAHQCIMTANENFLPYPEYEKILQRLDQACHEFDHESIREILLATPAGFNPTDGIGDLVWKAKKQQGIN
>Mature_635_residues
MFIINKIFSMPRIYKRIVSIFVDTVFIFSAFVGAFYTRLESVPFLDSSKYWQVLMLLVLSTLIFFIRVGLYRAILRYLSV
HALFTIVLSCAVSALFLVVLGYFFEVFLPRAIPIIYFAYLVLLSGGSRLLVRVLVSQHNTKQKDRVIIYGAGDSGRQLAN
LLRHGNEFHPVAFIDDEQKLFKNVVNGLTVYNSKDLKRLISRMQINKVLLAMPRAKRSQRKAIINTLTELRVEVKSVPAF
EEIINGSASMDQLCDVAIEDLLGRDCVLAKPELLNANIKNKVVMVTGAGGSIGSELCRQIVQQAPKSLILFELSEYGLYQ
IDKELSELVAGQNLTVQIIPLLGSVQRKNRLQTVLESFAVQTLYHAAAYKHVPMVEHNVVEGVRNNIFGTYYTALAAIAA
KVESFVLISTDKAVRPTNVMGTTKRMAELTLQSLAAEEHNTRFCMVRFGNVLGSSGSVIPLFKRQIAEGEYVTVTHPDII
RYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIHLSGLEVKTSQNPYGDIEIKFTGLRPGEKLFEELLI
GDNVEKTAHQCIMTANENFLPYPEYEKILQRLDQACHEFDHESIREILLATPAGFNPTDGIGDLVWKAKKQQGIN

Specific function: Involved in biofilm formation [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 71019; Mature: 71019

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIINKIFSMPRIYKRIVSIFVDTVFIFSAFVGAFYTRLESVPFLDSSKYWQVLMLLVLS
CEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
TLIFFIRVGLYRAILRYLSVHALFTIVLSCAVSALFLVVLGYFFEVFLPRAIPIIYFAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLSGGSRLLVRVLVSQHNTKQKDRVIIYGAGDSGRQLANLLRHGNEFHPVAFIDDEQKL
HHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCHHHH
FKNVVNGLTVYNSKDLKRLISRMQINKVLLAMPRAKRSQRKAIINTLTELRVEVKSVPAF
HHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
EEIINGSASMDQLCDVAIEDLLGRDCVLAKPELLNANIKNKVVMVTGAGGSIGSELCRQI
HHHHCCCCCHHHHHHHHHHHHCCCCCEECCCHHHCCCCCCCEEEEECCCCCHHHHHHHHH
VQQAPKSLILFELSEYGLYQIDKELSELVAGQNLTVQIIPLLGSVQRKNRLQTVLESFAV
HHHCCHHEEEEEHHHCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
QTLYHAAAYKHVPMVEHNVVEGVRNNIFGTYYTALAAIAAKVESFVLISTDKAVRPTNVM
HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC
GTTKRMAELTLQSLAAEEHNTRFCMVRFGNVLGSSGSVIPLFKRQIAEGEYVTVTHPDII
HHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCEEHHHHHHHCCCCEEEEECHHHH
RYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIHLSGLEVKTSQNPYGD
HHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCCC
IEIKFTGLRPGEKLFEELLIGDNVEKTAHQCIMTANENFLPYPEYEKILQRLDQACHEFD
EEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
HESIREILLATPAGFNPTDGIGDLVWKAKKQQGIN
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFIINKIFSMPRIYKRIVSIFVDTVFIFSAFVGAFYTRLESVPFLDSSKYWQVLMLLVLS
CEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
TLIFFIRVGLYRAILRYLSVHALFTIVLSCAVSALFLVVLGYFFEVFLPRAIPIIYFAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLSGGSRLLVRVLVSQHNTKQKDRVIIYGAGDSGRQLANLLRHGNEFHPVAFIDDEQKL
HHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCHHHH
FKNVVNGLTVYNSKDLKRLISRMQINKVLLAMPRAKRSQRKAIINTLTELRVEVKSVPAF
HHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
EEIINGSASMDQLCDVAIEDLLGRDCVLAKPELLNANIKNKVVMVTGAGGSIGSELCRQI
HHHHCCCCCHHHHHHHHHHHHCCCCCEECCCHHHCCCCCCCEEEEECCCCCHHHHHHHHH
VQQAPKSLILFELSEYGLYQIDKELSELVAGQNLTVQIIPLLGSVQRKNRLQTVLESFAV
HHHCCHHEEEEEHHHCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
QTLYHAAAYKHVPMVEHNVVEGVRNNIFGTYYTALAAIAAKVESFVLISTDKAVRPTNVM
HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC
GTTKRMAELTLQSLAAEEHNTRFCMVRFGNVLGSSGSVIPLFKRQIAEGEYVTVTHPDII
HHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCEEHHHHHHHCCCCEEEEECHHHH
RYFMTIPEAAQLVIQAGAMGKGGDVFVLDMGEPVKIVDLAKNLIHLSGLEVKTSQNPYGD
HHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCCC
IEIKFTGLRPGEKLFEELLIGDNVEKTAHQCIMTANENFLPYPEYEKILQRLDQACHEFD
EEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
HESIREILLATPAGFNPTDGIGDLVWKAKKQQGIN
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]