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The map label for this gene is rimM

Identifier: 119946971

GI number: 119946971

Start: 4158594

End: 4159121

Strand: Reverse

Name: rimM

Synonym: Ping_3366

Alternate gene names: 119946971

Gene position: 4159121-4158594 (Counterclockwise)

Preceding gene: 119946972

Following gene: 119946970

Centisome position: 91.22

GC content: 39.58

Gene sequence:

>528_bases
GTGAGCAAAAAAGCAGAACCAATTGTAATCGGTAAGTTTGGTGCGGTTCATGGTATCAAAGGCTGGTTGAAAGTTCACTC
CTACACCGATGATCCTGAAAGCATTTTTGAATATAAGCCTTTGTTAATGAAGTCAAAAGGGCAGTTTCAAGAAGTTAATA
TAGCTGATTGGAAACGTCACAGTAATGGTTTTGTTGCAAAAATAGTAGGATTTGATGTTAGAGAAGAAGCACAAGCCTTA
GTCGGTTTAGAGCTGCTCGTTGACTCAGATAAGCTTCCTAATTTGGAAGAGGATTTCTATTGGCGTGATTTAATCGGGTG
TCAGGTTAAAACTGACAATGGTTACGATCTGGGTGTTGTCACCGAGATCATGGAAACAGGCTCAAATGATGTGCTTGTTG
TAAAAGCCAACTCGAACGATGCTTTCGGACAGAAAGAGCGATTAATCCCGTTCATCGACAAGCAAGTAATTTCCAACGTG
GATATTACAAGCAAATTAATTCAAGTTAATTGGGAACCTGATTTCTGA

Upstream 100 bases:

>100_bases
CATTGGGTTGGTCTTGGCGCACAGCTAAGTGATCGTGTTGCTAAACTTGTAAAAGATAACGCAGTAGCTGCTTAAATTGC
AGTTAGGTGAGGGGAGATCG

Downstream 100 bases:

>100_bases
ATACCCTAGGAGAAAAGTGATGTGGATAGGGGTTGTAAGCCTCTTCCCGGATATGTTCCGGGCCATTAGCGACAATGGGG
TAACAGGTCGAGCGGTAAAA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSKKAEPIVIGKFGAVHGIKGWLKVHSYTDDPESIFEYKPLLMKSKGQFQEVNIADWKRHSNGFVAKIVGFDVREEAQAL
VGLELLVDSDKLPNLEEDFYWRDLIGCQVKTDNGYDLGVVTEIMETGSNDVLVVKANSNDAFGQKERLIPFIDKQVISNV
DITSKLIQVNWEPDF

Sequences:

>Translated_175_residues
MSKKAEPIVIGKFGAVHGIKGWLKVHSYTDDPESIFEYKPLLMKSKGQFQEVNIADWKRHSNGFVAKIVGFDVREEAQAL
VGLELLVDSDKLPNLEEDFYWRDLIGCQVKTDNGYDLGVVTEIMETGSNDVLVVKANSNDAFGQKERLIPFIDKQVISNV
DITSKLIQVNWEPDF
>Mature_174_residues
SKKAEPIVIGKFGAVHGIKGWLKVHSYTDDPESIFEYKPLLMKSKGQFQEVNIADWKRHSNGFVAKIVGFDVREEAQALV
GLELLVDSDKLPNLEEDFYWRDLIGCQVKTDNGYDLGVVTEIMETGSNDVLVVKANSNDAFGQKERLIPFIDKQVISNVD
ITSKLIQVNWEPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=171, Percent_Identity=54.9707602339181, Blast_Score=206, Evalue=9e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PSYIN (A1SZY7)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944651.1
- ProteinModelPortal:   A1SZY7
- SMR:   A1SZY7
- STRING:   A1SZY7
- GeneID:   4625677
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3366
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   A1SZY7
- BioCyc:   PING357804:PING_3366-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19762; Mature: 19630

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKAEPIVIGKFGAVHGIKGWLKVHSYTDDPESIFEYKPLLMKSKGQFQEVNIADWKRH
CCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHCCCEECCCCCEEECCHHHHHCC
SNGFVAKIVGFDVREEAQALVGLELLVDSDKLPNLEEDFYWRDLIGCQVKTDNGYDLGVV
CCCEEEEEECCCCHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCHHHH
TEIMETGSNDVLVVKANSNDAFGQKERLIPFIDKQVISNVDITSKLIQVNWEPDF
HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
SKKAEPIVIGKFGAVHGIKGWLKVHSYTDDPESIFEYKPLLMKSKGQFQEVNIADWKRH
CCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHCCCEECCCCCEEECCHHHHHCC
SNGFVAKIVGFDVREEAQALVGLELLVDSDKLPNLEEDFYWRDLIGCQVKTDNGYDLGVV
CCCEEEEEECCCCHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCHHHH
TEIMETGSNDVLVVKANSNDAFGQKERLIPFIDKQVISNVDITSKLIQVNWEPDF
HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA