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The map label for this gene is yciR [C]

Identifier: 119946934

GI number: 119946934

Start: 4109152

End: 4111287

Strand: Reverse

Name: yciR [C]

Synonym: Ping_3328

Alternate gene names: 119946934

Gene position: 4111287-4109152 (Counterclockwise)

Preceding gene: 119946935

Following gene: 119946932

Centisome position: 90.17

GC content: 45.97

Gene sequence:

>2136_bases
TTGACCAGAGTATTAGTGGTTGATGATGATATCACCGCCCGGCTTATGGCCCGTCAGGCGTTGGGCAAAGAAAACTTTGC
TGTTATAGAAGCTGAAGATGGCTTTGCTGCATTAGCGTTATTTGAGGCGGTACAGCCGGATATTGTGCTGCTGGATGTCG
AAATGCCGGGCATGAATGGTTTTGAAGTCTGCAGACAACTGCGCCGTTTTCCCTGCGGTAAATTAGTACCGATACTGATG
GCAACCGGACAGGATGATCTGGATTCGGTACGTCAGGCTTATGAAGCGGGTGCCACCGATTTTGTCACTAAACCGTTTAA
TTGGAAGATTCTGGCACACCGATTACGCTACATGGTAAGGGCCAGTGATATTACCGAACAGTTAGAGGAATTGCAGAAAA
GTGAATCACGCTTAGGTAATGCTCAGCGTATCGCTCGCCTGGGTAATTGGGAGTGGGACCTTAAGAGTAATGAAATTTAC
TGGTCAGAACAGCTTTATCATATGCTGTGGTTACGTCGCGGCGTTGCTAAACCAAGCTTTCGCGGTTTTATCAGCAGACT
GCCTCATGGCGAACGAAAAGATTTCATGGGCTGGATTCAGGGTCTGCGGCATGGTGCCAAGGAAGAACAACGAGGCGGCT
GGAATCATAGTCTTAATCAAGCTGACGGCAGTCGCCTGAATGTGCAGCATCAGGCTGAAGTGTTCTATGACGAAAACGGT
GCTGCCAAGGTGGTATCGGGTACCGTGGTTGACGTGACTGAATTGACACAAGCACAAGACCAAATTCTTCAGCTGGCTCA
CTTTGATAGCCTTACCGGATTGGCTAACCGCAATGCCTTTCGGAAACGGGTCGAGCTAGCGATGGAACGGGCAAAACAGT
ATGGTCACCTTGGGGCGGTTTTATTTCTGGATCTGGATAACTTTAAAAGAATTAACGATACCCTTGGACACAGCATCGGT
GATCAACTTTTACAAGAAGTGGCCAGACGTTTAACCGACATTGTTCGCGGTAGTGATAGTATCTGCGGTACGAATTTTAA
CCATGCAATAGATGATAATCTGATTTCCCGTCTTGGTGGTGATGAATTTACAGTATTATTGCCTGAGATCGGAAAAATAA
AAGATGCGGAACATGCTGCCAGAAGAGTGCTTAATTCGATCGGGGACATTATTAATCTTTCTGGTCATGACATTGTTGTC
ACCCCGAGCATTGGTATAGCGATCTTCCCGCATCATGGTGAAAATGTTGATAGCCTGCTTAAAAATGCTGATGCTGCTAT
GTATTACGTTAAGCGTGCGGGCAAGAATGACTATGAACTGTTTGTTAACTCCATGAATGTTGTGGCGAAACGTCGCCTGG
AACTGGAAAGTTTTTTACGGCATGCTATTGATAATAAAGAACTTTCGGTCAACTACCAGCCGCAAATTGATATTCCGACT
GGGCGTATTATTGGTGCCGAAGCCCTGCTCCGTTGGAATAGTGCTGAACTTGGAATGGTTTCTCCGGTTGAATTTATTCC
GATCGCGGAGGAGACCGGATTAATTTCACCAATTGGCGAGTGGGTGCTCAGAGAAGCGTGTCGTCAGGTTAAAGAATGGC
GAGATGATGGCTTGCCTGAGATTCAGATTGCAGTGAATATATCAGTGCAGCAGTTCGCTAAACAGAGTCTTGATAAATTG
GTATCAAAAGTGTTGTTAGAGACGGGTCTGCCAGTTCATTGTCTGGAGCTTGAGATCACTGAGAATATGTTGATGGACGA
TGTCGAAGGTGCTGTTGAGACCTTACATAAACTGAAAGATTTAGGTATCAATCTGGCGATAGATGACTTTGGCACCGGCT
ATTCAAGCCTGAGTTATCTGAAACGTTTCCCGATCGATAAGCTTAAAATTGACCGCTCCTTTATTACCTATGTGACCACT
GAACCTAGCGATGCCGCGGTCACTCAGGCGATTATTTCAATGGCACATAATTTGGGGTTAACGGTGATAGCGGAAGGTGT
GGAAGAGGCATCTCAACTGGAATTTTTACGTCAGCATCATTGCGAAGAAATGCAGGGCTATTATTTTAGCAGACCGCTGA
TTGCATCGGATATGGAAGCTTTGTTGCGCAGCCATAAAGGCTCGCCAAAGATTTGA

Upstream 100 bases:

>100_bases
GTAAGTATTGATGGAGAATATCAACGGGTCAGGATGGCATTAATTAAAATTAAAGAGAATAATAATGCAGAAAATTCAGA
TGAACAGTGGAGCCATTAAA

Downstream 100 bases:

>100_bases
TATTGCAGAAACGAATAGAAAGAAGCAGCTGACTAGGCTCAGCAATACCTTCCTCGAAGTGAAATAGGCAAAGGTGTTAT
AGTTTCGATTATTTTTTCGT

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 711; Mature: 710

Protein sequence:

>711_residues
MTRVLVVDDDITARLMARQALGKENFAVIEAEDGFAALALFEAVQPDIVLLDVEMPGMNGFEVCRQLRRFPCGKLVPILM
ATGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMVRASDITEQLEELQKSESRLGNAQRIARLGNWEWDLKSNEIY
WSEQLYHMLWLRRGVAKPSFRGFISRLPHGERKDFMGWIQGLRHGAKEEQRGGWNHSLNQADGSRLNVQHQAEVFYDENG
AAKVVSGTVVDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHLGAVLFLDLDNFKRINDTLGHSIG
DQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGGDEFTVLLPEIGKIKDAEHAARRVLNSIGDIINLSGHDIVV
TPSIGIAIFPHHGENVDSLLKNADAAMYYVKRAGKNDYELFVNSMNVVAKRRLELESFLRHAIDNKELSVNYQPQIDIPT
GRIIGAEALLRWNSAELGMVSPVEFIPIAEETGLISPIGEWVLREACRQVKEWRDDGLPEIQIAVNISVQQFAKQSLDKL
VSKVLLETGLPVHCLELEITENMLMDDVEGAVETLHKLKDLGINLAIDDFGTGYSSLSYLKRFPIDKLKIDRSFITYVTT
EPSDAAVTQAIISMAHNLGLTVIAEGVEEASQLEFLRQHHCEEMQGYYFSRPLIASDMEALLRSHKGSPKI

Sequences:

>Translated_711_residues
MTRVLVVDDDITARLMARQALGKENFAVIEAEDGFAALALFEAVQPDIVLLDVEMPGMNGFEVCRQLRRFPCGKLVPILM
ATGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMVRASDITEQLEELQKSESRLGNAQRIARLGNWEWDLKSNEIY
WSEQLYHMLWLRRGVAKPSFRGFISRLPHGERKDFMGWIQGLRHGAKEEQRGGWNHSLNQADGSRLNVQHQAEVFYDENG
AAKVVSGTVVDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHLGAVLFLDLDNFKRINDTLGHSIG
DQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGGDEFTVLLPEIGKIKDAEHAARRVLNSIGDIINLSGHDIVV
TPSIGIAIFPHHGENVDSLLKNADAAMYYVKRAGKNDYELFVNSMNVVAKRRLELESFLRHAIDNKELSVNYQPQIDIPT
GRIIGAEALLRWNSAELGMVSPVEFIPIAEETGLISPIGEWVLREACRQVKEWRDDGLPEIQIAVNISVQQFAKQSLDKL
VSKVLLETGLPVHCLELEITENMLMDDVEGAVETLHKLKDLGINLAIDDFGTGYSSLSYLKRFPIDKLKIDRSFITYVTT
EPSDAAVTQAIISMAHNLGLTVIAEGVEEASQLEFLRQHHCEEMQGYYFSRPLIASDMEALLRSHKGSPKI
>Mature_710_residues
TRVLVVDDDITARLMARQALGKENFAVIEAEDGFAALALFEAVQPDIVLLDVEMPGMNGFEVCRQLRRFPCGKLVPILMA
TGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMVRASDITEQLEELQKSESRLGNAQRIARLGNWEWDLKSNEIYW
SEQLYHMLWLRRGVAKPSFRGFISRLPHGERKDFMGWIQGLRHGAKEEQRGGWNHSLNQADGSRLNVQHQAEVFYDENGA
AKVVSGTVVDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHLGAVLFLDLDNFKRINDTLGHSIGD
QLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGGDEFTVLLPEIGKIKDAEHAARRVLNSIGDIINLSGHDIVVT
PSIGIAIFPHHGENVDSLLKNADAAMYYVKRAGKNDYELFVNSMNVVAKRRLELESFLRHAIDNKELSVNYQPQIDIPTG
RIIGAEALLRWNSAELGMVSPVEFIPIAEETGLISPIGEWVLREACRQVKEWRDDGLPEIQIAVNISVQQFAKQSLDKLV
SKVLLETGLPVHCLELEITENMLMDDVEGAVETLHKLKDLGINLAIDDFGTGYSSLSYLKRFPIDKLKIDRSFITYVTTE
PSDAAVTQAIISMAHNLGLTVIAEGVEEASQLEFLRQHHCEEMQGYYFSRPLIASDMEALLRSHKGSPKI

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=456, Percent_Identity=37.719298245614, Blast_Score=311, Evalue=1e-85,
Organism=Escherichia coli, GI87081921, Length=506, Percent_Identity=34.3873517786561, Blast_Score=288, Evalue=9e-79,
Organism=Escherichia coli, GI226510982, Length=344, Percent_Identity=30.5232558139535, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI87081845, Length=265, Percent_Identity=35.0943396226415, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=34.468085106383, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=34.5833333333333, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=35.655737704918, Blast_Score=145, Evalue=9e-36,
Organism=Escherichia coli, GI87081980, Length=258, Percent_Identity=32.5581395348837, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=32.7800829875519, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=30.6382978723404, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI1788381, Length=431, Percent_Identity=25.2900232018561, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788849, Length=206, Percent_Identity=33.9805825242718, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI87081881, Length=221, Percent_Identity=33.9366515837104, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=35, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=36.4640883977901, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87082096, Length=252, Percent_Identity=25.7936507936508, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=27.6595744680851, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=30.6818181818182, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786599, Length=181, Percent_Identity=28.1767955801105, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=182, Percent_Identity=31.8681318681319, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1790299, Length=105, Percent_Identity=35.2380952380952, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788550, Length=152, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1789650, Length=429, Percent_Identity=19.8135198135198, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=187, Percent_Identity=28.8770053475936, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=229, Percent_Identity=27.5109170305677, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1790863, Length=157, Percent_Identity=28.0254777070064, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786911, Length=159, Percent_Identity=31.4465408805031, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788394, Length=137, Percent_Identity=28.4671532846715, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787816, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787410, Length=115, Percent_Identity=33.9130434782609, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788191, Length=114, Percent_Identity=35.9649122807018, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1789809, Length=163, Percent_Identity=26.9938650306748, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 79861; Mature: 79730

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRVLVVDDDITARLMARQALGKENFAVIEAEDGFAALALFEAVQPDIVLLDVEMPGMNG
CCEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCH
FEVCRQLRRFPCGKLVPILMATGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMVR
HHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHH
ASDITEQLEELQKSESRLGNAQRIARLGNWEWDLKSNEIYWSEQLYHMLWLRRGVAKPSF
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCCCEEHHHHHHHHHHHHHCCCCCHH
RGFISRLPHGERKDFMGWIQGLRHGAKEEQRGGWNHSLNQADGSRLNVQHQAEVFYDENG
HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCEECEEEEEEEEECCCC
AAKVVSGTVVDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHLGAV
CEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LFLDLDNFKRINDTLGHSIGDQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGG
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
DEFTVLLPEIGKIKDAEHAARRVLNSIGDIINLSGHDIVVTPSIGIAIFPHHGENVDSLL
CCEEEECCCCCCCCCHHHHHHHHHHHHHHEEECCCCCEEEECCCCEEEECCCCCCHHHHH
KNADAAMYYVKRAGKNDYELFVNSMNVVAKRRLELESFLRHAIDNKELSVNYQPQIDIPT
HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
GRIIGAEALLRWNSAELGMVSPVEFIPIAEETGLISPIGEWVLREACRQVKEWRDDGLPE
CCEECHHHHHEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
IQIAVNISVQQFAKQSLDKLVSKVLLETGLPVHCLELEITENMLMDDVEGAVETLHKLKD
EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
LGINLAIDDFGTGYSSLSYLKRFPIDKLKIDRSFITYVTTEPSDAAVTQAIISMAHNLGL
CCCEEEEECCCCCHHHHHHHHHCCCHHEEECCEEEEEEECCCCHHHHHHHHHHHHHHCCH
TVIAEGVEEASQLEFLRQHHCEEMQGYYFSRPLIASDMEALLRSHKGSPKI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TRVLVVDDDITARLMARQALGKENFAVIEAEDGFAALALFEAVQPDIVLLDVEMPGMNG
CEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCH
FEVCRQLRRFPCGKLVPILMATGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMVR
HHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHH
ASDITEQLEELQKSESRLGNAQRIARLGNWEWDLKSNEIYWSEQLYHMLWLRRGVAKPSF
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCCCEEHHHHHHHHHHHHHCCCCCHH
RGFISRLPHGERKDFMGWIQGLRHGAKEEQRGGWNHSLNQADGSRLNVQHQAEVFYDENG
HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCEECEEEEEEEEECCCC
AAKVVSGTVVDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHLGAV
CEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
LFLDLDNFKRINDTLGHSIGDQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGG
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC
DEFTVLLPEIGKIKDAEHAARRVLNSIGDIINLSGHDIVVTPSIGIAIFPHHGENVDSLL
CCEEEECCCCCCCCCHHHHHHHHHHHHHHEEECCCCCEEEECCCCEEEECCCCCCHHHHH
KNADAAMYYVKRAGKNDYELFVNSMNVVAKRRLELESFLRHAIDNKELSVNYQPQIDIPT
HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
GRIIGAEALLRWNSAELGMVSPVEFIPIAEETGLISPIGEWVLREACRQVKEWRDDGLPE
CCEECHHHHHEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
IQIAVNISVQQFAKQSLDKLVSKVLLETGLPVHCLELEITENMLMDDVEGAVETLHKLKD
EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
LGINLAIDDFGTGYSSLSYLKRFPIDKLKIDRSFITYVTTEPSDAAVTQAIISMAHNLGL
CCCEEEEECCCCCHHHHHHHHHCCCHHEEECCEEEEEEECCCCHHHHHHHHHHHHHHCCH
TVIAEGVEEASQLEFLRQHHCEEMQGYYFSRPLIASDMEALLRSHKGSPKI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]