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The map label for this gene is 119946894

Identifier: 119946894

GI number: 119946894

Start: 4058807

End: 4059373

Strand: Reverse

Name: 119946894

Synonym: Ping_3288

Alternate gene names: NA

Gene position: 4059373-4058807 (Counterclockwise)

Preceding gene: 119946899

Following gene: 119946891

Centisome position: 89.03

GC content: 43.03

Gene sequence:

>567_bases
ATGAATCGTTATCTATTAGCTGGAAAATATAGTGCAGGCATCATGCTGTTTTGCAGCATGGTTTTAATGGTTAATGCTGT
ATTACCGATGGATTTAAATCAGTTCGGTATTGTCCCCCGTTCCTTTGATCATCTCAGTGGTATTTTTATGGCGCCTTTTC
TACATGGAAGCTGGTTGCACCTGCTCAGTAATTTTTTACCCTTTATAGTCTTTGGAACCTTAATTGGTGCGCAGGGTAGC
AAACGATTCTGGCTGTTATTTCTCCTGCATATCAGCTCTACGGGAATGTTAGTGTGGTTATTCGCACGAGGTAACAGCGT
ACACATCGGAATGAGCGGGGTAATTTATGCCTTCTGGGGCTATTTAATCGTTTATGGTTTTGTTCGGGGAAAAATCCTGC
ACCTTGTGATCTCGCTGCTGATGCTTATTTTTTACGGAGGATTAGTTTTTGGCGTCTTTCCAACAAAATTTGGCGTGTCA
TTTGAGAGTCACCTGTTAGGCGCATTAGTCGGCGCTGCCAGTGGCTATTATTTTGCTAAACCAGTGGCTCAACATCGAGC
ACTGTAG

Upstream 100 bases:

>100_bases
AATGACTAAAGGTTTCTTCATCTATTTAGAAAATATAATTGAATTTTAACCGGGCTTTCAGCTATTTTGTCTTAATAAAT
AGCAAATTATAAGGAAGACA

Downstream 100 bases:

>100_bases
TGGTTGACCCTGCATTAATCCAAGAGATATTAAAGTCGAGAAGATGCACTGCATATTTTTTTGGATCTTCTTTTGTCTTT
TTATAAGCAGGGCGCGGGTC

Product: rhomboid family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNRYLLAGKYSAGIMLFCSMVLMVNAVLPMDLNQFGIVPRSFDHLSGIFMAPFLHGSWLHLLSNFLPFIVFGTLIGAQGS
KRFWLLFLLHISSTGMLVWLFARGNSVHIGMSGVIYAFWGYLIVYGFVRGKILHLVISLLMLIFYGGLVFGVFPTKFGVS
FESHLLGALVGAASGYYFAKPVAQHRAL

Sequences:

>Translated_188_residues
MNRYLLAGKYSAGIMLFCSMVLMVNAVLPMDLNQFGIVPRSFDHLSGIFMAPFLHGSWLHLLSNFLPFIVFGTLIGAQGS
KRFWLLFLLHISSTGMLVWLFARGNSVHIGMSGVIYAFWGYLIVYGFVRGKILHLVISLLMLIFYGGLVFGVFPTKFGVS
FESHLLGALVGAASGYYFAKPVAQHRAL
>Mature_188_residues
MNRYLLAGKYSAGIMLFCSMVLMVNAVLPMDLNQFGIVPRSFDHLSGIFMAPFLHGSWLHLLSNFLPFIVFGTLIGAQGS
KRFWLLFLLHISSTGMLVWLFARGNSVHIGMSGVIYAFWGYLIVYGFVRGKILHLVISLLMLIFYGGLVFGVFPTKFGVS
FESHLLGALVGAASGYYFAKPVAQHRAL

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.leprae ML1171 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 20848; Mature: 20848

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYLLAGKYSAGIMLFCSMVLMVNAVLPMDLNQFGIVPRSFDHLSGIFMAPFLHGSWLH
CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHH
LLSNFLPFIVFGTLIGAQGSKRFWLLFLLHISSTGMLVWLFARGNSVHIGMSGVIYAFWG
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCEEEECHHHHHHHHHH
YLIVYGFVRGKILHLVISLLMLIFYGGLVFGVFPTKFGVSFESHLLGALVGAASGYYFAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHC
PVAQHRAL
HHHHHCCC
>Mature Secondary Structure
MNRYLLAGKYSAGIMLFCSMVLMVNAVLPMDLNQFGIVPRSFDHLSGIFMAPFLHGSWLH
CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHH
LLSNFLPFIVFGTLIGAQGSKRFWLLFLLHISSTGMLVWLFARGNSVHIGMSGVIYAFWG
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCEEEECHHHHHHHHHH
YLIVYGFVRGKILHLVISLLMLIFYGGLVFGVFPTKFGVSFESHLLGALVGAASGYYFAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHC
PVAQHRAL
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]