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The map label for this gene is ysgA [H]

Identifier: 119946835

GI number: 119946835

Start: 3983831

End: 3984574

Strand: Reverse

Name: ysgA [H]

Synonym: Ping_3229

Alternate gene names: 119946835

Gene position: 3984574-3983831 (Counterclockwise)

Preceding gene: 119946836

Following gene: 119946832

Centisome position: 87.39

GC content: 37.5

Gene sequence:

>744_bases
ATGATTTCAAAAAATCAGCTAAAACTTATTCATGCACTTGAGCAAAAAAAACAGCGTAAAAAAAATGGTCTGTTTTTAGT
GCAGGGTGAAAAAAATGTGGGTGAATTGTTTAATTCTGATTTTACGGTAAAACAACTTTTTGCAACCAGCAGTTATATCA
ATAAAAATAGCAGGGCACTTAACGAGTTTGGCCTTGTTAGTCTTACTATTGAAGCCACAGAAGATGAGTTAAAAAAAGCA
GGGACTTTAATATCAAATAACAGCGTGCTTGCTGTGGTCGAGTGCAAAATAATGCCGCTTCCACAAATCCAAAAAGATGA
ATTGATTCTGGTATTGGATCAGGTAGGTGATCCCGGAAACTTAGGGACTATTATTCGTGTTGCCGACTGGTACGGGATTA
AACATATTATTTGCAGCCCGGACTGTGCTGATTTTTATAATCCTAAAGTGATCGCTGCCAGTATGGGATCATTTGCACGA
GTACAGGTGAGTCACACAGATTTGTCTGAATATCTGAGTCAACAATCAATGGCGATTTATGGGGCTTTTCTGGAAGGGGA
AAATATTCATAAAGCAAATTTAAATAAAAGTGCTTTTATTGTGATGGGCAGTGAATCACACGGTATTTCGCCAGAGATTG
AAAAATTTATCAGCCATAAAATGACGATCCCCAGTTTTGGAGGTGCGGAGTCATTAAATGTGGCTATGGCAACGGGTATT
ATTGTCGATAATTTTAAACGTTAA

Upstream 100 bases:

>100_bases
AGCTTGATAGACGTAAAGATTATTATCCTTGTAAAAATGGCAGAGAAGATGCTGTTATTATGTGTTGCTACCTATCACTT
TGAAGAACGAGAAATAAATT

Downstream 100 bases:

>100_bases
ATGGGCTCTGCATCCCTTTTTACATCCAGAGGGCAGAGTCTTCAATCTGGTCATGGCAGCGGGTATTATAACCCCTTAAT
TTTCAATTCTCCCTGACACT

Product: tRNA/rRNA methyltransferase (SpoU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MISKNQLKLIHALEQKKQRKKNGLFLVQGEKNVGELFNSDFTVKQLFATSSYINKNSRALNEFGLVSLTIEATEDELKKA
GTLISNNSVLAVVECKIMPLPQIQKDELILVLDQVGDPGNLGTIIRVADWYGIKHIICSPDCADFYNPKVIAASMGSFAR
VQVSHTDLSEYLSQQSMAIYGAFLEGENIHKANLNKSAFIVMGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATGI
IVDNFKR

Sequences:

>Translated_247_residues
MISKNQLKLIHALEQKKQRKKNGLFLVQGEKNVGELFNSDFTVKQLFATSSYINKNSRALNEFGLVSLTIEATEDELKKA
GTLISNNSVLAVVECKIMPLPQIQKDELILVLDQVGDPGNLGTIIRVADWYGIKHIICSPDCADFYNPKVIAASMGSFAR
VQVSHTDLSEYLSQQSMAIYGAFLEGENIHKANLNKSAFIVMGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATGI
IVDNFKR
>Mature_247_residues
MISKNQLKLIHALEQKKQRKKNGLFLVQGEKNVGELFNSDFTVKQLFATSSYINKNSRALNEFGLVSLTIEATEDELKKA
GTLISNNSVLAVVECKIMPLPQIQKDELILVLDQVGDPGNLGTIIRVADWYGIKHIICSPDCADFYNPKVIAASMGSFAR
VQVSHTDLSEYLSQQSMAIYGAFLEGENIHKANLNKSAFIVMGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATGI
IVDNFKR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27180; Mature: 27180

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKNQLKLIHALEQKKQRKKNGLFLVQGEKNVGELFNSDFTVKQLFATSSYINKNSRAL
CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHHCCCCHHH
NEFGLVSLTIEATEDELKKAGTLISNNSVLAVVECKIMPLPQIQKDELILVLDQVGDPGN
HHCCEEEEEEECCHHHHHHCCCEEECCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCC
LGTIIRVADWYGIKHIICSPDCADFYNPKVIAASMGSFARVQVSHTDLSEYLSQQSMAIY
CCEEEEEECCCCEEEEEECCCCCHHCCCEEEEECCCCEEEEEEECCCHHHHHHHCCEEEE
GAFLEGENIHKANLNKSAFIVMGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATGI
EEEECCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEE
IVDNFKR
EECCCCC
>Mature Secondary Structure
MISKNQLKLIHALEQKKQRKKNGLFLVQGEKNVGELFNSDFTVKQLFATSSYINKNSRAL
CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHHCCCCHHH
NEFGLVSLTIEATEDELKKAGTLISNNSVLAVVECKIMPLPQIQKDELILVLDQVGDPGN
HHCCEEEEEEECCHHHHHHCCCEEECCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCC
LGTIIRVADWYGIKHIICSPDCADFYNPKVIAASMGSFARVQVSHTDLSEYLSQQSMAIY
CCEEEEEECCCCEEEEEECCCCCHHCCCEEEEECCCCEEEEEEECCCHHHHHHHCCEEEE
GAFLEGENIHKANLNKSAFIVMGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATGI
EEEECCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEE
IVDNFKR
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]