Definition | Psychromonas ingrahamii 37, complete genome. |
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Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is 119946757
Identifier: 119946757
GI number: 119946757
Start: 3876915
End: 3877994
Strand: Reverse
Name: 119946757
Synonym: Ping_3150
Alternate gene names: NA
Gene position: 3877994-3876915 (Counterclockwise)
Preceding gene: 119946759
Following gene: 119946756
Centisome position: 85.05
GC content: 38.98
Gene sequence:
>1080_bases ATGAATATATTAAAATGTAAATCGACAAAGCTAGCGATAGCTTCGGTACTGTTAGCAGGACTGACGGCAACCTCTTTTGC TGCAGAGAGAGTTTATACTTGGAAGTTGGCAACAACTTGGGGACCGACACTATCACCCTTTATTGATGCTCCACACCAGA TGGCTAAGCTGGTTGAAGAGATGTCTGATGGCAGACTAATCATTAGAATAGATGCATCAAATAAGCATAAAGCAGCATTT GGTGTTTTTGATATGGTTAAAGGTGGCCAATATGATATGGCACACAGCGCATCATATTACTGGAAAGGTAAAGATATTAA CACCTTACCTTTTACAACAATGCCTTTTGGTATGACGACACCTGAACAATACGCCTGGTTCTATGAAGGTGGCGGAATGG AACTTATGCAAAAAGCCTACGCACCTCATAATATTTTGTCATTTCCAGGTGGAAACACTGGGAATCAGATGGGCGGATGG TTTAGAAAGGAAATTAAGACGCTGGACGATTTGGATGGTCTGAAGATGAGGATCCCTGGATTTGCTGGTGAGGTAATGGC GAAACTAGGTGTTGCTGTTACCAACATTCCATCGGGTGAACTATACACTTCACTAGAACGTGGTGTTCTTGACGCACTGG AATGGGTTGGTCCTGGCATGGACGTAAATATGGGCTTTCATAAAATAGCGCCGTTTTATTATACAGGTTGGCATGAACCA GCGACAGAGCTACAGTATTTAGTCAATGAGAAAAAGTTTGATAGATTACCAAAAGATTTACAAGTAATTTTGAAAACTGC CATGAAACTTAGCGCATATGATATGTATATTAAAAACTATGCAATGAGTGCTGAGGCATTGTCTGAGATGGATACTAAAT ATCCAAATATTAAAGTAATGACTTTTCCAAAACCGGTTATGGATGCTATGAAAAAAGCTAATAGTGAGTTAATAGCTGAA ATAACTAAAGACAACCCACTATTAAAAGAAGTGATAGATTCACAATTGGCTTTCCAGAAAAAAGCGAGAGCGTGGACTAT TATGTCTGACTACAATTATTTAAAAGATAACTTGGAATAA
Upstream 100 bases:
>100_bases TTGTGTTAAATTCTTGCTTAATATGGGGTGGTGCACATTTTTATAAAATTAATGCCTATTTTATATATCTATAGTATCAG TAAAACAATAAGGATAAAAG
Downstream 100 bases:
>100_bases TATAAGTACAGTCTCCTTTATGTAAGGGGACTGCTCATTTTTATAAATTGAATGAGCGAACATTTTTATGAATCGAATGA GCATAATAATATTATACTCA
Product: TRAP dicarboxylate transporter- DctP subunit
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal; TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; Transporter Periplasmic Component; TRAP Mannitol/C4-Dicarboxylate Transporter; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; TRAP Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter DctP Subunit; Tat Pathway Signal Sequence Domain-Containing Protein; Trap-T Transport System Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; C4-Dicarboxylate Transporter; Tat Pathway Signal Sequence Domain-Containing; TRAP Dicarboxylate Transporter
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MNILKCKSTKLAIASVLLAGLTATSFAAERVYTWKLATTWGPTLSPFIDAPHQMAKLVEEMSDGRLIIRIDASNKHKAAF GVFDMVKGGQYDMAHSASYYWKGKDINTLPFTTMPFGMTTPEQYAWFYEGGGMELMQKAYAPHNILSFPGGNTGNQMGGW FRKEIKTLDDLDGLKMRIPGFAGEVMAKLGVAVTNIPSGELYTSLERGVLDALEWVGPGMDVNMGFHKIAPFYYTGWHEP ATELQYLVNEKKFDRLPKDLQVILKTAMKLSAYDMYIKNYAMSAEALSEMDTKYPNIKVMTFPKPVMDAMKKANSELIAE ITKDNPLLKEVIDSQLAFQKKARAWTIMSDYNYLKDNLE
Sequences:
>Translated_359_residues MNILKCKSTKLAIASVLLAGLTATSFAAERVYTWKLATTWGPTLSPFIDAPHQMAKLVEEMSDGRLIIRIDASNKHKAAF GVFDMVKGGQYDMAHSASYYWKGKDINTLPFTTMPFGMTTPEQYAWFYEGGGMELMQKAYAPHNILSFPGGNTGNQMGGW FRKEIKTLDDLDGLKMRIPGFAGEVMAKLGVAVTNIPSGELYTSLERGVLDALEWVGPGMDVNMGFHKIAPFYYTGWHEP ATELQYLVNEKKFDRLPKDLQVILKTAMKLSAYDMYIKNYAMSAEALSEMDTKYPNIKVMTFPKPVMDAMKKANSELIAE ITKDNPLLKEVIDSQLAFQKKARAWTIMSDYNYLKDNLE >Mature_359_residues MNILKCKSTKLAIASVLLAGLTATSFAAERVYTWKLATTWGPTLSPFIDAPHQMAKLVEEMSDGRLIIRIDASNKHKAAF GVFDMVKGGQYDMAHSASYYWKGKDINTLPFTTMPFGMTTPEQYAWFYEGGGMELMQKAYAPHNILSFPGGNTGNQMGGW FRKEIKTLDDLDGLKMRIPGFAGEVMAKLGVAVTNIPSGELYTSLERGVLDALEWVGPGMDVNMGFHKIAPFYYTGWHEP ATELQYLVNEKKFDRLPKDLQVILKTAMKLSAYDMYIKNYAMSAEALSEMDTKYPNIKVMTFPKPVMDAMKKANSELIAE ITKDNPLLKEVIDSQLAFQKKARAWTIMSDYNYLKDNLE
Specific function: Unknown
COG id: COG4663
COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40326; Mature: 40326
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 6.1 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 6.1 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILKCKSTKLAIASVLLAGLTATSFAAERVYTWKLATTWGPTLSPFIDAPHQMAKLVEE CCCEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHCCHHHHHHHHHH MSDGRLIIRIDASNKHKAAFGVFDMVKGGQYDMAHSASYYWKGKDINTLPFTTMPFGMTT HCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC PEQYAWFYEGGGMELMQKAYAPHNILSFPGGNTGNQMGGWFRKEIKTLDDLDGLKMRIPG HHHEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCC FAGEVMAKLGVAVTNIPSGELYTSLERGVLDALEWVGPGMDVNMGFHKIAPFYYTGWHEP CHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEECCCCH ATELQYLVNEKKFDRLPKDLQVILKTAMKLSAYDMYIKNYAMSAEALSEMDTKYPNIKVM HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE TFPKPVMDAMKKANSELIAEITKDNPLLKEVIDSQLAFQKKARAWTIMSDYNYLKDNLE ECCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCEEEEECCCHHHHCCCC >Mature Secondary Structure MNILKCKSTKLAIASVLLAGLTATSFAAERVYTWKLATTWGPTLSPFIDAPHQMAKLVEE CCCEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHCCHHHHHHHHHH MSDGRLIIRIDASNKHKAAFGVFDMVKGGQYDMAHSASYYWKGKDINTLPFTTMPFGMTT HCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC PEQYAWFYEGGGMELMQKAYAPHNILSFPGGNTGNQMGGWFRKEIKTLDDLDGLKMRIPG HHHEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCC FAGEVMAKLGVAVTNIPSGELYTSLERGVLDALEWVGPGMDVNMGFHKIAPFYYTGWHEP CHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEECCCCH ATELQYLVNEKKFDRLPKDLQVILKTAMKLSAYDMYIKNYAMSAEALSEMDTKYPNIKVM HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE TFPKPVMDAMKKANSELIAEITKDNPLLKEVIDSQLAFQKKARAWTIMSDYNYLKDNLE ECCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCEEEEECCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA