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The map label for this gene is ydcM [C]

Identifier: 119946682

GI number: 119946682

Start: 3761291

End: 3762424

Strand: Reverse

Name: ydcM [C]

Synonym: Ping_3063

Alternate gene names: 119946682

Gene position: 3762424-3761291 (Counterclockwise)

Preceding gene: 119946686

Following gene: 119946681

Centisome position: 82.52

GC content: 44.27

Gene sequence:

>1134_bases
ATGAAAAAGAAAGCGTATAAATACAGATTTTACCCAACCGACGAACAATCTTTGCTTCTAGCAAAGACTTTCGGCTGTGT
ACGCTTTATTTACAACCGGGTCTTAAAAGTGAGAACCGACGCATACTACAAAGATGGTGCTAGTGTTAACTACTCTGCCG
CCAGTAAAATACTAACAGAGCTTAAAAAAGACCCTGAGCTTGTCTGGCTGAAAGAAGTCGCATCGGTGGCGCTGCAACAA
AGTTTACGTCACCAGCAAACGGCATTTACCAACTTCTGGGATCGCCGTGCAAAATACCCAACCTTTAAGAAGAAAAATGC
TCGTCAATCGTTTAGCTTGGTGGGCACTGCCTTCCGTTATCGTGATGGGAACATTTATATTCCAAAATCTAACGAGCCAC
TAAATATTCGATGGTCACAGGCGATGCCTTGTGAACCATCAACCATTACTATCTCAAAAGATGCCGCTGGGCGCTATTTT
ATTAGCTGTCTGTGTGAAATTGATATTAAACCAATGCCAATCTCAGCTAAACAGGTTGGCATCGATTTAGGATTAACCGA
TCTTTACATTACCAGCGATGGTTTTAAATCTGGTAACCCCCGCCATTTAAAGCGATATGAAGCGAAATTAGCATACTTGC
AGCGCATGCTGTCAAGAAAGAAAAAAGGCGCTAAAAACCGCAATAAAATGCGTTTAAAAGTAGCCCAACTTCACGCTAAG
ATCGCTGATTGCCGGATGGACGCCACCCATAAGGCGACCCGTAAACTTATTAACGAAAACCAAGTTGTTTGCGTCGAAAA
TCTTGCTGTTAAAAACATGATCAAAAACCCCAAACTAGCGAAGCATATTGCTGATGCAAATTGGGGGGAATTCGTTCGCC
AATTACACTACAAAGGTGTTTGGGCTGGGCGAAATGTGATTGAAATAGATCGGTGGTTCCCGTCATCAAAGCGCTGTAGC
ACCGAGGGTTGTGGATTCGTAAATGAATCATTACCACTTAGTGTGCGGAGATGGGCATGCCCGAAATGCGGTTCGCACCA
TGACCGCGACATCAATGCAGCAAAGAATATTAAAGCCGTCGGACTGACGGTGTTAGCCTCTGGAGCGACTGGATCGGGGG
CAAAAGTAGCGTAA

Upstream 100 bases:

>100_bases
TGCGAGCAGAAGCGAGTAAACTTAGGTGGTGGTGTAAGCCCATGCAACATAGTTGCATTTATTTATTGGCAATCTACACA
AATAGTGATATTTTACTAGA

Downstream 100 bases:

>100_bases
GTTATTTTTGTCTAGTGAAGGCGTGTTGATAGAGGAAACCCTAGCGAGTGATCACTAGGAATCCCCTTCAAAATATTGTG
AGCTTTAAGCGAGCAAATTT

Product: transposase, IS605 OrfB family protein

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKKKAYKYRFYPTDEQSLLLAKTFGCVRFIYNRVLKVRTDAYYKDGASVNYSAASKILTELKKDPELVWLKEVASVALQQ
SLRHQQTAFTNFWDRRAKYPTFKKKNARQSFSLVGTAFRYRDGNIYIPKSNEPLNIRWSQAMPCEPSTITISKDAAGRYF
ISCLCEIDIKPMPISAKQVGIDLGLTDLYITSDGFKSGNPRHLKRYEAKLAYLQRMLSRKKKGAKNRNKMRLKVAQLHAK
IADCRMDATHKATRKLINENQVVCVENLAVKNMIKNPKLAKHIADANWGEFVRQLHYKGVWAGRNVIEIDRWFPSSKRCS
TEGCGFVNESLPLSVRRWACPKCGSHHDRDINAAKNIKAVGLTVLASGATGSGAKVA

Sequences:

>Translated_377_residues
MKKKAYKYRFYPTDEQSLLLAKTFGCVRFIYNRVLKVRTDAYYKDGASVNYSAASKILTELKKDPELVWLKEVASVALQQ
SLRHQQTAFTNFWDRRAKYPTFKKKNARQSFSLVGTAFRYRDGNIYIPKSNEPLNIRWSQAMPCEPSTITISKDAAGRYF
ISCLCEIDIKPMPISAKQVGIDLGLTDLYITSDGFKSGNPRHLKRYEAKLAYLQRMLSRKKKGAKNRNKMRLKVAQLHAK
IADCRMDATHKATRKLINENQVVCVENLAVKNMIKNPKLAKHIADANWGEFVRQLHYKGVWAGRNVIEIDRWFPSSKRCS
TEGCGFVNESLPLSVRRWACPKCGSHHDRDINAAKNIKAVGLTVLASGATGSGAKVA
>Mature_377_residues
MKKKAYKYRFYPTDEQSLLLAKTFGCVRFIYNRVLKVRTDAYYKDGASVNYSAASKILTELKKDPELVWLKEVASVALQQ
SLRHQQTAFTNFWDRRAKYPTFKKKNARQSFSLVGTAFRYRDGNIYIPKSNEPLNIRWSQAMPCEPSTITISKDAAGRYF
ISCLCEIDIKPMPISAKQVGIDLGLTDLYITSDGFKSGNPRHLKRYEAKLAYLQRMLSRKKKGAKNRNKMRLKVAQLHAK
IADCRMDATHKATRKLINENQVVCVENLAVKNMIKNPKLAKHIADANWGEFVRQLHYKGVWAGRNVIEIDRWFPSSKRCS
TEGCGFVNESLPLSVRRWACPKCGSHHDRDINAAKNIKAVGLTVLASGATGSGAKVA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=361, Percent_Identity=32.1329639889197, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 42764; Mature: 42764

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKAYKYRFYPTDEQSLLLAKTFGCVRFIYNRVLKVRTDAYYKDGASVNYSAASKILTE
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHH
LKKDPELVWLKEVASVALQQSLRHQQTAFTNFWDRRAKYPTFKKKNARQSFSLVGTAFRY
HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEEE
RDGNIYIPKSNEPLNIRWSQAMPCEPSTITISKDAAGRYFISCLCEIDIKPMPISAKQVG
ECCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEHEEEECCCCCCCCCHHHHC
IDLGLTDLYITSDGFKSGNPRHLKRYEAKLAYLQRMLSRKKKGAKNRNKMRLKVAQLHAK
EEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IADCRMDATHKATRKLINENQVVCVENLAVKNMIKNPKLAKHIADANWGEFVRQLHYKGV
HHHHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCE
WAGRNVIEIDRWFPSSKRCSTEGCGFVNESLPLSVRRWACPKCGSHHDRDINAAKNIKAV
ECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCEE
GLTVLASGATGSGAKVA
EEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKKKAYKYRFYPTDEQSLLLAKTFGCVRFIYNRVLKVRTDAYYKDGASVNYSAASKILTE
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHH
LKKDPELVWLKEVASVALQQSLRHQQTAFTNFWDRRAKYPTFKKKNARQSFSLVGTAFRY
HHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEEE
RDGNIYIPKSNEPLNIRWSQAMPCEPSTITISKDAAGRYFISCLCEIDIKPMPISAKQVG
ECCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEHEEEECCCCCCCCCHHHHC
IDLGLTDLYITSDGFKSGNPRHLKRYEAKLAYLQRMLSRKKKGAKNRNKMRLKVAQLHAK
EEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IADCRMDATHKATRKLINENQVVCVENLAVKNMIKNPKLAKHIADANWGEFVRQLHYKGV
HHHHHCCHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCE
WAGRNVIEIDRWFPSSKRCSTEGCGFVNESLPLSVRRWACPKCGSHHDRDINAAKNIKAV
ECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCEE
GLTVLASGATGSGAKVA
EEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]