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The map label for this gene is nagD [C]

Identifier: 119945336

GI number: 119945336

Start: 1972726

End: 1973493

Strand: Reverse

Name: nagD [C]

Synonym: Ping_1620

Alternate gene names: 119945336

Gene position: 1973493-1972726 (Counterclockwise)

Preceding gene: 119945339

Following gene: 119945333

Centisome position: 43.28

GC content: 42.84

Gene sequence:

>768_bases
ATGTTAAAAGCCCTTTTTATTGATTTAAGCGGCGTATTGTATGAAGGTCACAACGTTATTCCCGGCGCCGTCGCGGCCAT
TAAAAAGGCCAGAGCGAGCCAATTACAATTACGTTTTGTAACGAATACCTCTCGCAGAACCCGTACTCAGCTGTTAACTG
ATCTGCAAAATTTAGGGTTTGATCTGCAAAAAAAAGAGCTCTTTACTGCCCCTGTTGCTGTGCATGCGTGGCTGCAAGAA
AAAAAACTTCGCCCCTATTGTCTTATTCATCACAATATCAAAAGTGAATTCGCTGATTTGCTTCAGGCAATGCCTAATGC
GGTTGTGATTGGAGATGCTGAGCAAAATTTTTGTTATGATAAGTTAAATCGCGCCTTTCAATTATGCCAGCAAGGCGCAG
TGCTAGTCGGTATTGGCTATAATCGTTATTTTAAATTAGAGGGTCAGCTCCTGTTAGATGCAGGGCCCTTTATAAAAGCC
ATTGAGTTTGCGGCATTAACGCAAGCCATTATCATAGGAAAACCCAGCAAAGATTTTTTTCTACAAGCGCTTGCATCAAC
GGGTTTGAGTGCAGATCAAGTTTTGATGATTGGCGATGATATCTATGGTGATATTGAGGGTGCAATAAATGCCGGGCTGC
TTGCCGGATTGGTGCGTACGGGAAAATACCAAACAGGCGATGAGCATAAAATCAGCGCTGCCCATCTGACATTTAACTCA
ATTGTCGACGCCGTGGACTATGCTTTATCGGATCAGAGTAATAATTAG

Upstream 100 bases:

>100_bases
CACTAAATAGGGGTGTAGACCCTACACAAAAAAAGTGTTGTATTCAAAATAAGGCTTTATTCTATACTCTAGACAGAGTC
TCAACGGGGAGTGAATGGTT

Downstream 100 bases:

>100_bases
ATTTTAACGGTGTTAAAATCTAATTATTACTAAGTACGATATAACACCTTTATTACATGCCAACCAAACTTGGTTTTAAC
TAAATGCGGGGTTAATATTT

Product: HAD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLKALFIDLSGVLYEGHNVIPGAVAAIKKARASQLQLRFVTNTSRRTRTQLLTDLQNLGFDLQKKELFTAPVAVHAWLQE
KKLRPYCLIHHNIKSEFADLLQAMPNAVVIGDAEQNFCYDKLNRAFQLCQQGAVLVGIGYNRYFKLEGQLLLDAGPFIKA
IEFAALTQAIIIGKPSKDFFLQALASTGLSADQVLMIGDDIYGDIEGAINAGLLAGLVRTGKYQTGDEHKISAAHLTFNS
IVDAVDYALSDQSNN

Sequences:

>Translated_255_residues
MLKALFIDLSGVLYEGHNVIPGAVAAIKKARASQLQLRFVTNTSRRTRTQLLTDLQNLGFDLQKKELFTAPVAVHAWLQE
KKLRPYCLIHHNIKSEFADLLQAMPNAVVIGDAEQNFCYDKLNRAFQLCQQGAVLVGIGYNRYFKLEGQLLLDAGPFIKA
IEFAALTQAIIIGKPSKDFFLQALASTGLSADQVLMIGDDIYGDIEGAINAGLLAGLVRTGKYQTGDEHKISAAHLTFNS
IVDAVDYALSDQSNN
>Mature_255_residues
MLKALFIDLSGVLYEGHNVIPGAVAAIKKARASQLQLRFVTNTSRRTRTQLLTDLQNLGFDLQKKELFTAPVAVHAWLQE
KKLRPYCLIHHNIKSEFADLLQAMPNAVVIGDAEQNFCYDKLNRAFQLCQQGAVLVGIGYNRYFKLEGQLLLDAGPFIKA
IEFAALTQAIIIGKPSKDFFLQALASTGLSADQVLMIGDDIYGDIEGAINAGLLAGLVRTGKYQTGDEHKISAAHLTFNS
IVDAVDYALSDQSNN

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI14149777, Length=249, Percent_Identity=42.1686746987952, Blast_Score=203, Evalue=9e-53,
Organism=Homo sapiens, GI269847098, Length=255, Percent_Identity=40, Blast_Score=196, Evalue=2e-50,
Organism=Homo sapiens, GI269847104, Length=198, Percent_Identity=38.8888888888889, Blast_Score=154, Evalue=8e-38,
Organism=Homo sapiens, GI108796653, Length=259, Percent_Identity=30.1158301158301, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562356, Length=257, Percent_Identity=35.408560311284, Blast_Score=151, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI17557870, Length=251, Percent_Identity=28.6852589641434, Blast_Score=133, Evalue=8e-32,
Organism=Drosophila melanogaster, GI19920940, Length=225, Percent_Identity=35.5555555555556, Blast_Score=134, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR023215
- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00702 Hydrolase; PF00293 NUDIX [H]

EC number: NA

Molecular weight: Translated: 27970; Mature: 27970

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKALFIDLSGVLYEGHNVIPGAVAAIKKARASQLQLRFVTNTSRRTRTQLLTDLQNLGF
CCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCCC
DLQKKELFTAPVAVHAWLQEKKLRPYCLIHHNIKSEFADLLQAMPNAVVIGDAEQNFCYD
CCCHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCEEEEECCCCCHHHH
KLNRAFQLCQQGAVLVGIGYNRYFKLEGQLLLDAGPFIKAIEFAALTQAIIIGKPSKDFF
HHHHHHHHHHCCCEEEEECCCEEEEECCEEEEECCCHHHHHHHHHHHHHHEECCCCHHHH
LQALASTGLSADQVLMIGDDIYGDIEGAINAGLLAGLVRTGKYQTGDEHKISAAHLTFNS
HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHH
IVDAVDYALSDQSNN
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MLKALFIDLSGVLYEGHNVIPGAVAAIKKARASQLQLRFVTNTSRRTRTQLLTDLQNLGF
CCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHCCC
DLQKKELFTAPVAVHAWLQEKKLRPYCLIHHNIKSEFADLLQAMPNAVVIGDAEQNFCYD
CCCHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCEEEEECCCCCHHHH
KLNRAFQLCQQGAVLVGIGYNRYFKLEGQLLLDAGPFIKAIEFAALTQAIIIGKPSKDFF
HHHHHHHHHHCCCEEEEECCCEEEEECCEEEEECCCHHHHHHHHHHHHHHEECCCCHHHH
LQALASTGLSADQVLMIGDDIYGDIEGAINAGLLAGLVRTGKYQTGDEHKISAAHLTFNS
HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHH
IVDAVDYALSDQSNN
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631946 [H]