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The map label for this gene is alsB [H]

Identifier: 119944867

GI number: 119944867

Start: 1387053

End: 1388057

Strand: Direct

Name: alsB [H]

Synonym: Ping_1110

Alternate gene names: 119944867

Gene position: 1387053-1388057 (Clockwise)

Preceding gene: 119944859

Following gene: 119944868

Centisome position: 30.42

GC content: 41.39

Gene sequence:

>1005_bases
ATGACTCCTACTATCAGAATATTTACTTCCGCTTTATTTGTTCAATTTACAGGCATTATACTGCTTACGCTCTTTATGGT
GGGCTGCGGTGAAGACGCCGCACCGAAATTCTCAGTAGAATTAAAAAGCAAAGTGATACAGAACGAACCACAAGATAAAC
ACACTATTGCGCTGGTGATGAAAACACTCACCAATCCTTTTTTTAAAGAGATGGAACGGGGGGCTCGTCGGGCAGAAAAA
GATTTAGGGATTAACTTATTGGTCAAAACTGCTGCACAAGAGACGTCCATACAGCAACAAATTGGCATCGTTGCTGACCT
TATTGAGCTCAAGGTAGATGCACTAGTGATTGCCCCGGGTGATTCTGTTGAGCTTATTCCAATTTTAAAGCACGCTCAAG
ATAAGGGTATTATTGTGATTAATATCGATAATCTTCTGGATCAAGAATACTCAAAAAAAGTGGGTCTGCTAAATGTTCCT
TTTATCAGCGTTGACAATGAACTGGCAGCCTACAAGTCAACCAAAGTGCTAACTGAAAAATTAACTCAACCAACAGAAGT
GGCTATTATAGAAGGGATACGTGGTGCATTAAATGCTGAGCTTCGAAAAAACGGCGCTATCCGAGCATTTTCTGAAAGTA
AATTTGCAACCCTCGTTGCAACAGAAAGTGCCAATTGGAAAATTGATGAAGCCTTTGAACTGGCTGCAAAACTCTATAAC
AAAAACCCCAATATCGGCGCTATATTTTGCGCTAATGATATGATGGCATTGGGGGTTATTGAATACCTTCAATCGACGGG
AAAAGATAATGTGCAGGTAGTGGCTTTTGATGCTATCCCCCAAGCCCTGAACGCGGTTCAATCAGGTGTGCTTCTCGCGA
CAGTAGATCAGGACGCGGCAGAGCAGGGCTATCAAGGTATTTTATCTGCCAACAACATTCTATCCGGCAAAAAAACACCC
CTCAAGATTACCATTGAAGCCAAAATTATCACTAAACTAGAATAA

Upstream 100 bases:

>100_bases
TAAGCTGTTCGTAATATCGCTCTTCTGATATATAGTATATTGATTCTATTACTTATTAAAATCAATGTCATTTTATTATC
AACCTTGAGGTGCTGTGGTT

Downstream 100 bases:

>100_bases
TAGTTGCTCGAGGTGGTTATGAATATCAGTTACAAAAAAATATTTCCAAAATATATCGGTTTTCTGTTGATCGTTAGCGT
GATCCCTCTGTTAGCCGTCG

Product: transcriptional regulator, periplasmic binding protein of LacI family protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: ALBP [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MTPTIRIFTSALFVQFTGIILLTLFMVGCGEDAAPKFSVELKSKVIQNEPQDKHTIALVMKTLTNPFFKEMERGARRAEK
DLGINLLVKTAAQETSIQQQIGIVADLIELKVDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVP
FISVDNELAAYKSTKVLTEKLTQPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDEAFELAAKLYN
KNPNIGAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLLATVDQDAAEQGYQGILSANNILSGKKTP
LKITIEAKIITKLE

Sequences:

>Translated_334_residues
MTPTIRIFTSALFVQFTGIILLTLFMVGCGEDAAPKFSVELKSKVIQNEPQDKHTIALVMKTLTNPFFKEMERGARRAEK
DLGINLLVKTAAQETSIQQQIGIVADLIELKVDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVP
FISVDNELAAYKSTKVLTEKLTQPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDEAFELAAKLYN
KNPNIGAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLLATVDQDAAEQGYQGILSANNILSGKKTP
LKITIEAKIITKLE
>Mature_333_residues
TPTIRIFTSALFVQFTGIILLTLFMVGCGEDAAPKFSVELKSKVIQNEPQDKHTIALVMKTLTNPFFKEMERGARRAEKD
LGINLLVKTAAQETSIQQQIGIVADLIELKVDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPF
ISVDNELAAYKSTKVLTEKLTQPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDEAFELAAKLYNK
NPNIGAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLLATVDQDAAEQGYQGILSANNILSGKKTPL
KITIEAKIITKLE

Specific function: Part of the binding-protein-dependent transport system AlsBAC for D-allose [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=280, Percent_Identity=36.0714285714286, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1790192, Length=280, Percent_Identity=32.1428571428571, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36311; Mature: 36179

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTIRIFTSALFVQFTGIILLTLFMVGCGEDAAPKFSVELKSKVIQNEPQDKHTIALVM
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
KTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIELKVDALVIAPG
HHHCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEECCC
DSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAAYKSTKVLTEK
CCEEEEEHHHCCCCCCEEEEEEHHHHHHHHHHCCCEEECCEEEECCHHHHHHHHHHHHHH
LTQPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDEAFELAAKLYN
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHC
KNPNIGAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLLATVDQDAA
CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCEEEEEECCHHH
EQGYQGILSANNILSGKKTPLKITIEAKIITKLE
HHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECC
>Mature Secondary Structure 
TPTIRIFTSALFVQFTGIILLTLFMVGCGEDAAPKFSVELKSKVIQNEPQDKHTIALVM
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
KTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIELKVDALVIAPG
HHHCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEECCC
DSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAAYKSTKVLTEK
CCEEEEEHHHCCCCCCEEEEEEHHHHHHHHHHCCCEEECCEEEECCHHHHHHHHHHHHHH
LTQPTEVAIIEGIRGALNAELRKNGAIRAFSESKFATLVATESANWKIDEAFELAAKLYN
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHC
KNPNIGAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLLATVDQDAA
CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCEEEEEECCHHH
EQGYQGILSANNILSGKKTPLKITIEAKIITKLE
HHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 8576032; 9401019; 10064713 [H]