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The map label for this gene is yohK [H]

Identifier: 119944825

GI number: 119944825

Start: 1341448

End: 1342125

Strand: Direct

Name: yohK [H]

Synonym: Ping_1067

Alternate gene names: 119944825

Gene position: 1341448-1342125 (Clockwise)

Preceding gene: 119944824

Following gene: 119944828

Centisome position: 29.42

GC content: 41.0

Gene sequence:

>678_bases
ATGCTGTTCTATCTGGCCCTGCCCTGCACCTTAGTAATATTTTTTGCCAGTAAAGCGTTATACGCAATTAAACCCTGGGC
AATATTCCATCCCTTTGTATTATCTGTTTTATCCTTGTTATTACTTCATTATTTTCTTAAATTAGATTATTCACAATATG
AGGAGGGGACATCTCTGCTCGTCGCTTTATTAGAGCCGGCCGTTGTGGTTCTTGCATTACCGCTTTATCTACAACTGCAC
CTTATTAAAGAAAAATTTAATATTATTTTAAGCGCTTGTTTGTTAGCCGTGTTGATAGCTTTTAGTTGTGCGTTATTTCT
TATGCCGCTTTTAGGCGCCGATTTGGTGACTGCTGCTTCCTTGGCCGGACAGCATGTTACTACGCCAATCGCGATGGAGA
TAAGTCGTAGTTTAAATGGGATCCCTTCATTAACGGCTGCGATGGTTGTTTGTGTTGGTATTTTCGGTGGAAGTGTTGGG
CTGGCTTTTTATAAATTATGTGGGATTAAAGATAATCAGGCTCAGGGTGTCGCAATGGGGTGTGCAGCACACGCGCTTGG
CACAGCTAAAATAATGGAAACAGATAAAGTGGCTGGCGCTTTTGCGTCTATTTCACTTATTATCTGCGCTATTTTATCCG
CCATTTTGATGCCTCTGTTATATGCTGTGCTTTTTTAA

Upstream 100 bases:

>100_bases
TGGTTTGTGATTACATTTTCATTTTTCTTTACAACCTTATTAATTCTTTTATCCGTGGGGCATTTGTACCAGTTTTTAAA
TAAAAAAGAGGATCTTTAAT

Downstream 100 bases:

>100_bases
CGAAAAAAAAACCGAAGATTAACTTCGGTTTTCTGAGCTTGTATTATACCCAACTACTTTAAGGTGCAGGAGTCCGGATC
TTCAAGTAGTTTGCTTATAT

Product: LrgB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MLFYLALPCTLVIFFASKALYAIKPWAIFHPFVLSVLSLLLLHYFLKLDYSQYEEGTSLLVALLEPAVVVLALPLYLQLH
LIKEKFNIILSACLLAVLIAFSCALFLMPLLGADLVTAASLAGQHVTTPIAMEISRSLNGIPSLTAAMVVCVGIFGGSVG
LAFYKLCGIKDNQAQGVAMGCAAHALGTAKIMETDKVAGAFASISLIICAILSAILMPLLYAVLF

Sequences:

>Translated_225_residues
MLFYLALPCTLVIFFASKALYAIKPWAIFHPFVLSVLSLLLLHYFLKLDYSQYEEGTSLLVALLEPAVVVLALPLYLQLH
LIKEKFNIILSACLLAVLIAFSCALFLMPLLGADLVTAASLAGQHVTTPIAMEISRSLNGIPSLTAAMVVCVGIFGGSVG
LAFYKLCGIKDNQAQGVAMGCAAHALGTAKIMETDKVAGAFASISLIICAILSAILMPLLYAVLF
>Mature_225_residues
MLFYLALPCTLVIFFASKALYAIKPWAIFHPFVLSVLSLLLLHYFLKLDYSQYEEGTSLLVALLEPAVVVLALPLYLQLH
LIKEKFNIILSACLLAVLIAFSCALFLMPLLGADLVTAASLAGQHVTTPIAMEISRSLNGIPSLTAAMVVCVGIFGGSVG
LAFYKLCGIKDNQAQGVAMGCAAHALGTAKIMETDKVAGAFASISLIICAILSAILMPLLYAVLF

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=221, Percent_Identity=36.1990950226244, Blast_Score=153, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 23983; Mature: 23983

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFYLALPCTLVIFFASKALYAIKPWAIFHPFVLSVLSLLLLHYFLKLDYSQYEEGTSLL
CEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VALLEPAVVVLALPLYLQLHLIKEKFNIILSACLLAVLIAFSCALFLMPLLGADLVTAAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGQHVTTPIAMEISRSLNGIPSLTAAMVVCVGIFGGSVGLAFYKLCGIKDNQAQGVAMG
HCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHH
CAAHALGTAKIMETDKVAGAFASISLIICAILSAILMPLLYAVLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MLFYLALPCTLVIFFASKALYAIKPWAIFHPFVLSVLSLLLLHYFLKLDYSQYEEGTSLL
CEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VALLEPAVVVLALPLYLQLHLIKEKFNIILSACLLAVLIAFSCALFLMPLLGADLVTAAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGQHVTTPIAMEISRSLNGIPSLTAAMVVCVGIFGGSVGLAFYKLCGIKDNQAQGVAMG
HCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHH
CAAHALGTAKIMETDKVAGAFASISLIICAILSAILMPLLYAVLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]