Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
Click here to switch to the map view.
The map label for this gene is 119944810
Identifier: 119944810
GI number: 119944810
Start: 1326908
End: 1327936
Strand: Direct
Name: 119944810
Synonym: Ping_1052
Alternate gene names: NA
Gene position: 1326908-1327936 (Clockwise)
Preceding gene: 119944809
Following gene: 119944819
Centisome position: 29.1
GC content: 43.83
Gene sequence:
>1029_bases ATGTCAACTTTTGCACTTGCTTTTGGTACTGCCACAAAAAACCGCGATCAAAAAATTATTGAAGCTTTCTTTCCTAATCC TATCTTGAATCCAAGTGATGATCTGGTTTCTGTTATCGGTGCTATTACAGGCTATGAACAGGGTAATCAAGTTATTGAAA TAAAAGCTGAAATGTCCGAATATTTAGCGGCTGCTTTCAACGGCGCTAATGACAGCGCAAATGCGGATTTTGCAACGGCC GCGGCAAAATCAAGCCAACCTTTAGTCTTAGTTATTCTGGCAACAGATGATGCGCCGCAAAGTGTCGCTGAAGGTTACCT GAAGCTGCAGCTTATCTCGCATCGTTTAGTTAAACCCCATGGTTTAATTTTAGACGGTATTTTTGGCCTACTGCATAATA TTGCCTGGACCAACAAAGGCGCAATCGATCTTCCTGAATTATCTGACCGCCAGATAGAGGCGCGTTTAAAGGGTGAAACT ATCACCGTTGATTGCGTTGATAAGTTTCCTAAAATGGTTGACTACATTGTACCAAGCGGTGTACGCATTGCTGATACCTC TCGCGTACGTTTGGGCGCGCATGTGGGGCAAGGCACTACTGTGATGCATGAAGGTTTTATCAATTTCAATGCCGGCACAG CTGGCGTCAGCATGATTGAAGGACGAATTTCTGCCGGTGTAATGGTGGGTGAAGGTACTGATATTGGTGGTGGTGCATCG ACCATGGGGACCTTAAGTGGTGGTGGCAAGATGGTCATCACTATTGGTGAAAACAGTTTATTAGGCGCTAATGCAGGTTT AGGGATTCCACTTGGTAATCGCTGCACTATCGAGGCCGGATTATACATAACAGCGGGTTCAAAAGTGAAAATGCTTGATA ATGAAGGTAAAGAAGCAGGTTATGCTAAGGCGCGTGAACTTGCAAATAAAGATGATTTGCTTTTCCGCCGTAATTCAATG ACGGGACAGATTGAATGCTTAGTGAATAAAAGCGCGGTTGAATTGAACAGTATGCTGCATTCAAACTAA
Upstream 100 bases:
>100_bases TTCCTGCATATTCAAGTGAGTTGGGGATAAATCTGTAATCCGCATCTTGATTATGATTTAATAAAACACTATATTGAATT TTTAAAACGGAGTTATATTA
Downstream 100 bases:
>100_bases ATTTTTATATACAGTAAAACAAGCAAGGGACTCAATCGAGTCCCTTTTTTTATAAGCTAGGGTAATACTTTTTTAAAGGG TTTTACGATGACCTTTTTAT
Product: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
Products: CoA; (R)-2-(succinylamino)-6-oxoheptanedioate
Alternate protein names: Transferase; Tetrahydrodipicolinate Succinylase; Tetrahydropicolinate Succinylase; Tetrahydrodipicolinate N- Succinyltransferase; Succinyltransferase; Transferase Hexapeptide Repeat Containing Protein; Succinyl-Transferase; Lysine Biosynthesis-Like Protein; Transferase Tetrahydrodipicolinate N-Succinyltransferase; Tranferase; Tetrahydrodipicolinate N-Succinyltransferase-Like Protein
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MSTFALAFGTATKNRDQKIIEAFFPNPILNPSDDLVSVIGAITGYEQGNQVIEIKAEMSEYLAAAFNGANDSANADFATA AAKSSQPLVLVILATDDAPQSVAEGYLKLQLISHRLVKPHGLILDGIFGLLHNIAWTNKGAIDLPELSDRQIEARLKGET ITVDCVDKFPKMVDYIVPSGVRIADTSRVRLGAHVGQGTTVMHEGFINFNAGTAGVSMIEGRISAGVMVGEGTDIGGGAS TMGTLSGGGKMVITIGENSLLGANAGLGIPLGNRCTIEAGLYITAGSKVKMLDNEGKEAGYAKARELANKDDLLFRRNSM TGQIECLVNKSAVELNSMLHSN
Sequences:
>Translated_342_residues MSTFALAFGTATKNRDQKIIEAFFPNPILNPSDDLVSVIGAITGYEQGNQVIEIKAEMSEYLAAAFNGANDSANADFATA AAKSSQPLVLVILATDDAPQSVAEGYLKLQLISHRLVKPHGLILDGIFGLLHNIAWTNKGAIDLPELSDRQIEARLKGET ITVDCVDKFPKMVDYIVPSGVRIADTSRVRLGAHVGQGTTVMHEGFINFNAGTAGVSMIEGRISAGVMVGEGTDIGGGAS TMGTLSGGGKMVITIGENSLLGANAGLGIPLGNRCTIEAGLYITAGSKVKMLDNEGKEAGYAKARELANKDDLLFRRNSM TGQIECLVNKSAVELNSMLHSN >Mature_341_residues STFALAFGTATKNRDQKIIEAFFPNPILNPSDDLVSVIGAITGYEQGNQVIEIKAEMSEYLAAAFNGANDSANADFATAA AKSSQPLVLVILATDDAPQSVAEGYLKLQLISHRLVKPHGLILDGIFGLLHNIAWTNKGAIDLPELSDRQIEARLKGETI TVDCVDKFPKMVDYIVPSGVRIADTSRVRLGAHVGQGTTVMHEGFINFNAGTAGVSMIEGRISAGVMVGEGTDIGGGAST MGTLSGGGKMVITIGENSLLGANAGLGIPLGNRCTIEAGLYITAGSKVKMLDNEGKEAGYAKARELANKDDLLFRRNSMT GQIECLVNKSAVELNSMLHSN
Specific function: Unknown
COG id: COG2171
COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.3.1.117
Molecular weight: Translated: 36013; Mature: 35881
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFALAFGTATKNRDQKIIEAFFPNPILNPSDDLVSVIGAITGYEQGNQVIEIKAEMSE CCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHH YLAAAFNGANDSANADFATAAAKSSQPLVLVILATDDAPQSVAEGYLKLQLISHRLVKPH HHHHHHCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHEEEEHHHHHCCCC GLILDGIFGLLHNIAWTNKGAIDLPELSDRQIEARLKGETITVDCVDKFPKMVDYIVPSG CHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHCCCC VRIADTSRVRLGAHVGQGTTVMHEGFINFNAGTAGVSMIEGRISAGVMVGEGTDIGGGAS EEEECCCCEEEEEECCCCCEEEEECEEEECCCCCCHHHHHCHHHCCEEEECCCCCCCCCC TMGTLSGGGKMVITIGENSLLGANAGLGIPLGNRCTIEAGLYITAGSKVKMLDNEGKEAG CCEEECCCCEEEEEECCCCEEECCCCCCCCCCCEEEEEECEEEECCCEEEEECCCCCCCH YAKARELANKDDLLFRRNSMTGQIECLVNKSAVELNSMLHSN HHHHHHHCCCCCEEEEECCCCEEEEEEEECHHHHHHHHHCCC >Mature Secondary Structure STFALAFGTATKNRDQKIIEAFFPNPILNPSDDLVSVIGAITGYEQGNQVIEIKAEMSE CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHH YLAAAFNGANDSANADFATAAAKSSQPLVLVILATDDAPQSVAEGYLKLQLISHRLVKPH HHHHHHCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHEEEEHHHHHCCCC GLILDGIFGLLHNIAWTNKGAIDLPELSDRQIEARLKGETITVDCVDKFPKMVDYIVPSG CHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHCCCC VRIADTSRVRLGAHVGQGTTVMHEGFINFNAGTAGVSMIEGRISAGVMVGEGTDIGGGAS EEEECCCCEEEEEECCCCCEEEEECEEEECCCCCCHHHHHCHHHCCEEEECCCCCCCCCC TMGTLSGGGKMVITIGENSLLGANAGLGIPLGNRCTIEAGLYITAGSKVKMLDNEGKEAG CCEEECCCCEEEEEECCCCEEECCCCCCCCCCCEEEEEECEEEECCCEEEEECCCCCCCH YAKARELANKDDLLFRRNSMTGQIECLVNKSAVELNSMLHSN HHHHHHHCCCCCEEEEECCCCEEEEEEEECHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: succinyl-CoA; (R)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate; H2O
Specific reaction: succinyl-CoA + (R)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + H2O = CoA + (R)-2-(succinylamino)-6-oxoheptanedioate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA