Definition Psychromonas ingrahamii 37, complete genome.
Accession NC_008709
Length 4,559,598

Click here to switch to the map view.

The map label for this gene is gltD [H]

Identifier: 119944766

GI number: 119944766

Start: 1267688

End: 1269157

Strand: Direct

Name: gltD [H]

Synonym: Ping_1008

Alternate gene names: 119944766

Gene position: 1267688-1269157 (Clockwise)

Preceding gene: 119944765

Following gene: 119944767

Centisome position: 27.8

GC content: 44.15

Gene sequence:

>1470_bases
ATGGGTAAGCCAACTGGATTTTTAGAATTAGGTCGTGAACTACCTGGTAGAGTACCAGTAATAGAACGGATCAAAAATAA
TAAAGAGTTTGTAAAAAACGATGAGTTTGGCGACAAAGTCAGTGACCAAGCTTCTCGTTGTATGGATTGTGGTGTACCTT
TCTGTCACGATGGTTGTCCGATTGGTAACATTATTCCTGAGTTCAATGATGCGGTTTACCGTGAAAGTTGGGTAGAAGCT
TGGGATATATTAAGTGCAACGAATAACTTTCCTGAAGTCACCGGGCGTGTCTGCCCGGCGCCTTGTGAGACCTCCTGTGT
TCTTGGTATTAACCAGGATCCTGTTACGATTTGCAGCATAGAAAAAACCATTGCCGACAAAGCTTATGAAAATGGTTATG
CTAAGCCTAAAATTCCAACATCACGCACTGGCAAAACGGTTGCAATCGTGGGCAGTGGACCTGCTGGTTTAACTGCCGCT
GAGCAGCTAAACGGTGCCGGTCATACGGTGACTGTTTATGAACGTGACGAAAAAGTTGGCGGTTTAATGCGTTTTGGTAT
CCCAGACTTTAAGTTGGGTATGGATGTTATTGATCGTAAAATTGATGTGTTGGAAGCTGCTGGTATTAAGATGGTGGTGA
ATGCACACATTGGCGTTGATTTTGATGCTAAAGAGTTGCGTAAGCAGTTTGATGTGGTGTTATTGACAGGTGGTTCAACG
GTGCCTCGTGATTTACCTATTCCAGGCCGAGATCTGAAAGGTGTCCATTTTGCGATGGAATTCCTTTCTCAAAATAACCG
TCGTGCTAACGGTATGGAGATTAAAGGCGAAGAGATTCACGCCAAAGACGATCATGTTGTTGTTATTGGCGGCGGCGATA
CAGGTTCTGACTGTGTTGGTACTTCTAATCGTCATCAAGCGGCAAGCATTACGCAAGTGGAAATTATGCCGGTTCCGCCT
GAAAAACGTACGGTTAATATGCCTTGGCCTTCCTACCCAATGATCTTAAAAACAACGAGTTCACATCAGGAAGGTGCCGA
TCGTCATTGGTCTATTCTTACCAAAAAATTTATTGGTGATGAAAACGGCAACGTTAAAGAGTTAGTTGTTGCTGATATCG
AGTGGGAAAAAGCGGAACCCGGTAAACGTCCTAATTTCACCGAGATTGAAGGGACTGTTCGCAGCATTCCTTGTACTAAA
GCCTTTTTAGCAATGGGGTTCTTACACCCGGAGCCGACGGGTATTTTAGCGCAGCTTAATATCGCCTTGGATGAGCGTGG
CAATGTTCAAACAACTGATTATGCCACTAGCCAACAAGGTGTTTTTGCTTCTGGGGATATGCGTACAGGGCAATCATTAG
TTGTTCGCTGTATTAACGAAGGTCGTGAAGCTTCCCGTGCAATTGATGCTTATTTGATGGGCACATCGAACCTTGAAGCA
ATGGCCGACTCCTTAATGTTATCTCATTAA

Upstream 100 bases:

>100_bases
AATAAAGGCCTTCAGCTTGCAAAAGAGAGCATCTCGAACAGCGAGAAACAAGCGGCTAAAGCAACAACTCTTGATGCATG
CAAGATAGGAGACGTATAAA

Downstream 100 bases:

>100_bases
GATCATGTGAATGTTATCTAAGTAAGAACATTTGAAAAATGGACCTGTGATTTATCGGTTCATTAAAAAAGCAGCCTCCT
CTCTTTTTAAGAGCAGGGGG

Product: glutamate synthase subunit beta

Products: NA

Alternate protein names: NADPH-GOGAT [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MGKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCPIGNIIPEFNDAVYRESWVEA
WDILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSIEKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAA
EQLNGAGHTVTVYERDEKVGGLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGST
VPRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVGTSNRHQAASITQVEIMPVPP
EKRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGDENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTK
AFLAMGFLHPEPTGILAQLNIALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEA
MADSLMLSH

Sequences:

>Translated_489_residues
MGKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCPIGNIIPEFNDAVYRESWVEA
WDILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSIEKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAA
EQLNGAGHTVTVYERDEKVGGLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGST
VPRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVGTSNRHQAASITQVEIMPVPP
EKRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGDENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTK
AFLAMGFLHPEPTGILAQLNIALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEA
MADSLMLSH
>Mature_488_residues
GKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCPIGNIIPEFNDAVYRESWVEAW
DILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSIEKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAAE
QLNGAGHTVTVYERDEKVGGLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGSTV
PRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVGTSNRHQAASITQVEIMPVPPE
KRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGDENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTKA
FLAMGFLHPEPTGILAQLNIALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEAM
ADSLMLSH

Specific function: NITROGEN METABOLISM, GLUTAMATE BIOSYNTHESIS. THE CATALYZED REACTION BRINGS TOGETHER THE NITROGEN AND CARBON METABOLISM. [C]

COG id: COG0493

COG function: function code ER; NADPH-dependent glutamate synthase beta chain and related oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glutamate synthase family [H]

Homologues:

Organism=Homo sapiens, GI119943098, Length=480, Percent_Identity=23.75, Blast_Score=95, Evalue=2e-19,
Organism=Escherichia coli, GI1789606, Length=478, Percent_Identity=32.4267782426778, Blast_Score=218, Evalue=5e-58,
Organism=Escherichia coli, GI1788811, Length=446, Percent_Identity=31.8385650224215, Blast_Score=212, Evalue=6e-56,
Organism=Escherichia coli, GI87082180, Length=444, Percent_Identity=31.7567567567568, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI1788468, Length=441, Percent_Identity=26.530612244898, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1789243, Length=426, Percent_Identity=26.2910798122066, Blast_Score=99, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17570289, Length=492, Percent_Identity=44.1056910569106, Blast_Score=417, Evalue=1e-117,
Organism=Caenorhabditis elegans, GI71984108, Length=480, Percent_Identity=22.9166666666667, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17543860, Length=156, Percent_Identity=33.974358974359, Blast_Score=69, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6320030, Length=473, Percent_Identity=44.3974630021142, Blast_Score=393, Evalue=1e-110,
Organism=Drosophila melanogaster, GI28574881, Length=485, Percent_Identity=48.4536082474227, Blast_Score=457, Evalue=1e-128,
Organism=Drosophila melanogaster, GI24665539, Length=485, Percent_Identity=48.4536082474227, Blast_Score=457, Evalue=1e-128,
Organism=Drosophila melanogaster, GI24665547, Length=485, Percent_Identity=48.4536082474227, Blast_Score=455, Evalue=1e-128,
Organism=Drosophila melanogaster, GI24665543, Length=485, Percent_Identity=48.4536082474227, Blast_Score=455, Evalue=1e-128,
Organism=Drosophila melanogaster, GI24640763, Length=483, Percent_Identity=22.7743271221532, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI18858217, Length=483, Percent_Identity=22.7743271221532, Blast_Score=86, Evalue=5e-17,

Paralogues:

None

Copy number: 620 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR012285
- InterPro:   IPR006005
- InterPro:   IPR009051
- InterPro:   IPR016040
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.4.1.13 [H]

Molecular weight: Translated: 53227; Mature: 53096

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCP
CCCCCCHHHHHHHCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
IGNIIPEFNDAVYRESWVEAWDILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSI
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEECCCCCEEEEEH
EKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAAEQLNGAGHTVTVYERDEKVG
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEECCCCCC
GLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGST
CEEECCCCCHHHCHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHCCEEEEECCCC
VPRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVG
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCEEECCCCEEEEEECCCCCCCCCC
TSNRHQAASITQVEIMPVPPEKRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGD
CCCCCCCCEEEEEEEEECCCCCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC
ENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTKAFLAMGFLHPEPTGILAQLN
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCEEEEEE
IALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEA
EEECCCCCEEECCCCCCCCCEEECCCCCCCHHHHHHHHHCCHHHHHHHEEEEECCCCHHH
MADSLMLSH
HHHHHHCCC
>Mature Secondary Structure 
GKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCP
CCCCCHHHHHHHCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
IGNIIPEFNDAVYRESWVEAWDILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSI
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEECCCCCEEEEEH
EKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAAEQLNGAGHTVTVYERDEKVG
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEECCCCCC
GLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGST
CEEECCCCCHHHCHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHCCEEEEECCCC
VPRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVG
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCEEECCCCEEEEEECCCCCCCCCC
TSNRHQAASITQVEIMPVPPEKRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGD
CCCCCCCCEEEEEEEEECCCCCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC
ENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTKAFLAMGFLHPEPTGILAQLN
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCEEEEEE
IALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEA
EEECCCCCEEECCCCCCCCCEEECCCCCCCHHHHHHHHHCCHHHHHHHEEEEECCCCHHH
MADSLMLSH
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 11029411 [H]