Definition | Psychromonas ingrahamii 37, complete genome. |
---|---|
Accession | NC_008709 |
Length | 4,559,598 |
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The map label for this gene is gltD [H]
Identifier: 119944766
GI number: 119944766
Start: 1267688
End: 1269157
Strand: Direct
Name: gltD [H]
Synonym: Ping_1008
Alternate gene names: 119944766
Gene position: 1267688-1269157 (Clockwise)
Preceding gene: 119944765
Following gene: 119944767
Centisome position: 27.8
GC content: 44.15
Gene sequence:
>1470_bases ATGGGTAAGCCAACTGGATTTTTAGAATTAGGTCGTGAACTACCTGGTAGAGTACCAGTAATAGAACGGATCAAAAATAA TAAAGAGTTTGTAAAAAACGATGAGTTTGGCGACAAAGTCAGTGACCAAGCTTCTCGTTGTATGGATTGTGGTGTACCTT TCTGTCACGATGGTTGTCCGATTGGTAACATTATTCCTGAGTTCAATGATGCGGTTTACCGTGAAAGTTGGGTAGAAGCT TGGGATATATTAAGTGCAACGAATAACTTTCCTGAAGTCACCGGGCGTGTCTGCCCGGCGCCTTGTGAGACCTCCTGTGT TCTTGGTATTAACCAGGATCCTGTTACGATTTGCAGCATAGAAAAAACCATTGCCGACAAAGCTTATGAAAATGGTTATG CTAAGCCTAAAATTCCAACATCACGCACTGGCAAAACGGTTGCAATCGTGGGCAGTGGACCTGCTGGTTTAACTGCCGCT GAGCAGCTAAACGGTGCCGGTCATACGGTGACTGTTTATGAACGTGACGAAAAAGTTGGCGGTTTAATGCGTTTTGGTAT CCCAGACTTTAAGTTGGGTATGGATGTTATTGATCGTAAAATTGATGTGTTGGAAGCTGCTGGTATTAAGATGGTGGTGA ATGCACACATTGGCGTTGATTTTGATGCTAAAGAGTTGCGTAAGCAGTTTGATGTGGTGTTATTGACAGGTGGTTCAACG GTGCCTCGTGATTTACCTATTCCAGGCCGAGATCTGAAAGGTGTCCATTTTGCGATGGAATTCCTTTCTCAAAATAACCG TCGTGCTAACGGTATGGAGATTAAAGGCGAAGAGATTCACGCCAAAGACGATCATGTTGTTGTTATTGGCGGCGGCGATA CAGGTTCTGACTGTGTTGGTACTTCTAATCGTCATCAAGCGGCAAGCATTACGCAAGTGGAAATTATGCCGGTTCCGCCT GAAAAACGTACGGTTAATATGCCTTGGCCTTCCTACCCAATGATCTTAAAAACAACGAGTTCACATCAGGAAGGTGCCGA TCGTCATTGGTCTATTCTTACCAAAAAATTTATTGGTGATGAAAACGGCAACGTTAAAGAGTTAGTTGTTGCTGATATCG AGTGGGAAAAAGCGGAACCCGGTAAACGTCCTAATTTCACCGAGATTGAAGGGACTGTTCGCAGCATTCCTTGTACTAAA GCCTTTTTAGCAATGGGGTTCTTACACCCGGAGCCGACGGGTATTTTAGCGCAGCTTAATATCGCCTTGGATGAGCGTGG CAATGTTCAAACAACTGATTATGCCACTAGCCAACAAGGTGTTTTTGCTTCTGGGGATATGCGTACAGGGCAATCATTAG TTGTTCGCTGTATTAACGAAGGTCGTGAAGCTTCCCGTGCAATTGATGCTTATTTGATGGGCACATCGAACCTTGAAGCA ATGGCCGACTCCTTAATGTTATCTCATTAA
Upstream 100 bases:
>100_bases AATAAAGGCCTTCAGCTTGCAAAAGAGAGCATCTCGAACAGCGAGAAACAAGCGGCTAAAGCAACAACTCTTGATGCATG CAAGATAGGAGACGTATAAA
Downstream 100 bases:
>100_bases GATCATGTGAATGTTATCTAAGTAAGAACATTTGAAAAATGGACCTGTGATTTATCGGTTCATTAAAAAAGCAGCCTCCT CTCTTTTTAAGAGCAGGGGG
Product: glutamate synthase subunit beta
Products: NA
Alternate protein names: NADPH-GOGAT [H]
Number of amino acids: Translated: 489; Mature: 488
Protein sequence:
>489_residues MGKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCPIGNIIPEFNDAVYRESWVEA WDILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSIEKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAA EQLNGAGHTVTVYERDEKVGGLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGST VPRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVGTSNRHQAASITQVEIMPVPP EKRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGDENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTK AFLAMGFLHPEPTGILAQLNIALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEA MADSLMLSH
Sequences:
>Translated_489_residues MGKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCPIGNIIPEFNDAVYRESWVEA WDILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSIEKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAA EQLNGAGHTVTVYERDEKVGGLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGST VPRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVGTSNRHQAASITQVEIMPVPP EKRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGDENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTK AFLAMGFLHPEPTGILAQLNIALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEA MADSLMLSH >Mature_488_residues GKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCPIGNIIPEFNDAVYRESWVEAW DILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSIEKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAAE QLNGAGHTVTVYERDEKVGGLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGSTV PRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVGTSNRHQAASITQVEIMPVPPE KRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGDENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTKA FLAMGFLHPEPTGILAQLNIALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEAM ADSLMLSH
Specific function: NITROGEN METABOLISM, GLUTAMATE BIOSYNTHESIS. THE CATALYZED REACTION BRINGS TOGETHER THE NITROGEN AND CARBON METABOLISM. [C]
COG id: COG0493
COG function: function code ER; NADPH-dependent glutamate synthase beta chain and related oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glutamate synthase family [H]
Homologues:
Organism=Homo sapiens, GI119943098, Length=480, Percent_Identity=23.75, Blast_Score=95, Evalue=2e-19, Organism=Escherichia coli, GI1789606, Length=478, Percent_Identity=32.4267782426778, Blast_Score=218, Evalue=5e-58, Organism=Escherichia coli, GI1788811, Length=446, Percent_Identity=31.8385650224215, Blast_Score=212, Evalue=6e-56, Organism=Escherichia coli, GI87082180, Length=444, Percent_Identity=31.7567567567568, Blast_Score=187, Evalue=2e-48, Organism=Escherichia coli, GI1788468, Length=441, Percent_Identity=26.530612244898, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI1789243, Length=426, Percent_Identity=26.2910798122066, Blast_Score=99, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17570289, Length=492, Percent_Identity=44.1056910569106, Blast_Score=417, Evalue=1e-117, Organism=Caenorhabditis elegans, GI71984108, Length=480, Percent_Identity=22.9166666666667, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17543860, Length=156, Percent_Identity=33.974358974359, Blast_Score=69, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6320030, Length=473, Percent_Identity=44.3974630021142, Blast_Score=393, Evalue=1e-110, Organism=Drosophila melanogaster, GI28574881, Length=485, Percent_Identity=48.4536082474227, Blast_Score=457, Evalue=1e-128, Organism=Drosophila melanogaster, GI24665539, Length=485, Percent_Identity=48.4536082474227, Blast_Score=457, Evalue=1e-128, Organism=Drosophila melanogaster, GI24665547, Length=485, Percent_Identity=48.4536082474227, Blast_Score=455, Evalue=1e-128, Organism=Drosophila melanogaster, GI24665543, Length=485, Percent_Identity=48.4536082474227, Blast_Score=455, Evalue=1e-128, Organism=Drosophila melanogaster, GI24640763, Length=483, Percent_Identity=22.7743271221532, Blast_Score=86, Evalue=5e-17, Organism=Drosophila melanogaster, GI18858217, Length=483, Percent_Identity=22.7743271221532, Blast_Score=86, Evalue=5e-17,
Paralogues:
None
Copy number: 620 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR012285 - InterPro: IPR006005 - InterPro: IPR009051 - InterPro: IPR016040 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.4.1.13 [H]
Molecular weight: Translated: 53227; Mature: 53096
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCP CCCCCCHHHHHHHCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC IGNIIPEFNDAVYRESWVEAWDILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSI CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEECCCCCEEEEEH EKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAAEQLNGAGHTVTVYERDEKVG HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEECCCCCC GLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGST CEEECCCCCHHHCHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHCCEEEEECCCC VPRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVG CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCEEECCCCEEEEEECCCCCCCCCC TSNRHQAASITQVEIMPVPPEKRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGD CCCCCCCCEEEEEEEEECCCCCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC ENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTKAFLAMGFLHPEPTGILAQLN CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCEEEEEE IALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEA EEECCCCCEEECCCCCCCCCEEECCCCCCCHHHHHHHHHCCHHHHHHHEEEEECCCCHHH MADSLMLSH HHHHHHCCC >Mature Secondary Structure GKPTGFLELGRELPGRVPVIERIKNNKEFVKNDEFGDKVSDQASRCMDCGVPFCHDGCP CCCCCHHHHHHHCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC IGNIIPEFNDAVYRESWVEAWDILSATNNFPEVTGRVCPAPCETSCVLGINQDPVTICSI CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEECCCCCEEEEEH EKTIADKAYENGYAKPKIPTSRTGKTVAIVGSGPAGLTAAEQLNGAGHTVTVYERDEKVG HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEECCCCCC GLMRFGIPDFKLGMDVIDRKIDVLEAAGIKMVVNAHIGVDFDAKELRKQFDVVLLTGGST CEEECCCCCHHHCHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHCCEEEEECCCC VPRDLPIPGRDLKGVHFAMEFLSQNNRRANGMEIKGEEIHAKDDHVVVIGGGDTGSDCVG CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCEEECCCCEEEEEECCCCCCCCCC TSNRHQAASITQVEIMPVPPEKRTVNMPWPSYPMILKTTSSHQEGADRHWSILTKKFIGD CCCCCCCCEEEEEEEEECCCCCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC ENGNVKELVVADIEWEKAEPGKRPNFTEIEGTVRSIPCTKAFLAMGFLHPEPTGILAQLN CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCEEEEEE IALDERGNVQTTDYATSQQGVFASGDMRTGQSLVVRCINEGREASRAIDAYLMGTSNLEA EEECCCCCEEECCCCCCCCCEEECCCCCCCHHHHHHHHHCCHHHHHHHEEEEECCCCHHH MADSLMLSH HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11029411 [H]