BacMap

Definition	Psychromonas ingrahamii 37, complete genome.
Accession	NC_008709
Length	4,559,598

Click here to switch to the map view.

The map label for this gene is ydfG [C]

Identifier: 119944748

GI number: 119944748

Start: 1248602

End: 1249282

Strand: Direct

Name: ydfG [C]

Synonym: Ping_0989

Alternate gene names: 119944748

Gene position: 1248602-1249282 (Clockwise)

Preceding gene: 119944747

Following gene: 119944749

Centisome position: 27.38

GC content: 47.14

Gene sequence:

>681_bases
ATGACAAAACAGAAAATAGTGTTAATCACAGGTGCATCCAGCGGTATCGGTAAAGCCACAGCCAAAACGTTAGTCAAAAG
TGGACATAAGGTAATACTGACCGCCCGCAGACAAGAAAAATTGGATAAACTGGTAGCAATGCTAGGGGAAGATAACGCTC
TGGCTGTTGCCGCCGATGCCACCCAATTTGATGCATTAGAAAAGGTAGTAAAAGCTGGCATCAACAAGTTTGGCAGACTG
GATGTGGCCTTCGCTAACGCGGGCACCGGAATATCCATTTCAGGTACAGAACAGGGAGATCCAGATGAGTGGTCAAAACT
GATCGATATCAACATCAAAGCCTTGTTATGGACGGCCAAGTTAACTCTACCCAACTTGCGTGAGACCAAGGGGCATTTTA
TTTTAACCAGCTCAGTGGCCGGGCGTACGGCACATAAAGGTTCCATTTACGGTGCCAGTAAATGGTTTGCTTATGGCTTT
GGTCAGAACTTGGCTGAAGAAATGGCTCAATGGGGCGGACGCTGCACCACCATTGCCCCTGGCATGGTCAACACTGCGTT
TTTTGATGAGCCTAAACCCGATAAATTAGACCCGGTTGATGTCGCTGAAGCGGTACTATTTGCTATTGAAGCTGAGCAGC
GTTGTAATGTGCGTGAAATCTTTCTGATGCCAACCCACTAA

Upstream 100 bases:

>100_bases
TAAATGATTTTTACTGGGTGATAGCGCCCAATAGTTTGTATTAATGAAGAAAATTAATATACTAAGCGCATTAATTTTTT
TACAGCCAAGGGAGTGTTAT

Downstream 100 bases:

>100_bases
TAAACGGGCGACGTCCATATATCTGTTACCACAGCCCCGAATGGTCGTTAGAGGCGTAAATAAGCAAAAAACTGTCCAGT
AATCTCACCCACTAAAGCGT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTKQKIVLITGASSGIGKATAKTLVKSGHKVILTARRQEKLDKLVAMLGEDNALAVAADATQFDALEKVVKAGINKFGRL
DVAFANAGTGISISGTEQGDPDEWSKLIDINIKALLWTAKLTLPNLRETKGHFILTSSVAGRTAHKGSIYGASKWFAYGF
GQNLAEEMAQWGGRCTTIAPGMVNTAFFDEPKPDKLDPVDVAEAVLFAIEAEQRCNVREIFLMPTH

Sequences:

>Translated_226_residues
MTKQKIVLITGASSGIGKATAKTLVKSGHKVILTARRQEKLDKLVAMLGEDNALAVAADATQFDALEKVVKAGINKFGRL
DVAFANAGTGISISGTEQGDPDEWSKLIDINIKALLWTAKLTLPNLRETKGHFILTSSVAGRTAHKGSIYGASKWFAYGF
GQNLAEEMAQWGGRCTTIAPGMVNTAFFDEPKPDKLDPVDVAEAVLFAIEAEQRCNVREIFLMPTH
>Mature_225_residues
TKQKIVLITGASSGIGKATAKTLVKSGHKVILTARRQEKLDKLVAMLGEDNALAVAADATQFDALEKVVKAGINKFGRLD
VAFANAGTGISISGTEQGDPDEWSKLIDINIKALLWTAKLTLPNLRETKGHFILTSSVAGRTAHKGSIYGASKWFAYGFG
QNLAEEMAQWGGRCTTIAPGMVNTAFFDEPKPDKLDPVDVAEAVLFAIEAEQRCNVREIFLMPTH

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=26.6932270916335, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI5031737, Length=187, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI142976729, Length=223, Percent_Identity=30.4932735426009, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=32.1243523316062, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40807363, Length=195, Percent_Identity=32.3076923076923, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI38348362, Length=166, Percent_Identity=31.3253012048193, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI20149619, Length=237, Percent_Identity=27.8481012658228, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI38424085, Length=166, Percent_Identity=31.3253012048193, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI32455239, Length=191, Percent_Identity=29.3193717277487, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031765, Length=191, Percent_Identity=29.3193717277487, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723750, Length=191, Percent_Identity=28.2722513089005, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7705855, Length=221, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI59889578, Length=170, Percent_Identity=27.6470588235294, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4503817, Length=193, Percent_Identity=27.979274611399, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI22507405, Length=190, Percent_Identity=27.8947368421053, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI40254992, Length=228, Percent_Identity=28.0701754385965, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=171, Percent_Identity=27.4853801169591, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4758504, Length=236, Percent_Identity=27.1186440677966, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40548397, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI214010158, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI214010156, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI22758144, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI1787820, Length=235, Percent_Identity=31.9148936170213, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787526, Length=223, Percent_Identity=29.1479820627803, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787335, Length=218, Percent_Identity=30.2752293577982, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082100, Length=188, Percent_Identity=34.5744680851064, Blast_Score=72, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=194, Percent_Identity=33.5051546391753, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=199, Percent_Identity=31.1557788944724, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=32.9896907216495, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=195, Percent_Identity=33.8461538461538, Blast_Score=92, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=193, Percent_Identity=32.6424870466321, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=222, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=31.0880829015544, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=196, Percent_Identity=31.6326530612245, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=227, Percent_Identity=28.6343612334802, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=205, Percent_Identity=30.7317073170732, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=193, Percent_Identity=30.5699481865285, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=232, Percent_Identity=29.7413793103448, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=195, Percent_Identity=30.2564102564103, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=222, Percent_Identity=29.2792792792793, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=231, Percent_Identity=29.4372294372294, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=194, Percent_Identity=26.8041237113402, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=193, Percent_Identity=29.0155440414508, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=202, Percent_Identity=30.1980198019802, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=224, Percent_Identity=27.2321428571429, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=32.3076923076923, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=215, Percent_Identity=29.3023255813954, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=186, Percent_Identity=27.9569892473118, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=31.3131313131313, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=31.7948717948718, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=188, Percent_Identity=32.9787234042553, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=247, Percent_Identity=30.7692307692308, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6322226, Length=184, Percent_Identity=31.5217391304348, Blast_Score=85, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6322227, Length=191, Percent_Identity=33.5078534031414, Blast_Score=84, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6324126, Length=195, Percent_Identity=28.7179487179487, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=28.042328042328, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=196, Percent_Identity=27.5510204081633, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28571526, Length=188, Percent_Identity=34.0425531914894, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI23397609, Length=224, Percent_Identity=33.9285714285714, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=30.8510638297872, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=32.0855614973262, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI281364494, Length=242, Percent_Identity=25.6198347107438, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24663911, Length=241, Percent_Identity=28.2157676348548, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24644339, Length=186, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641232, Length=242, Percent_Identity=27.6859504132231, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641388, Length=241, Percent_Identity=27.3858921161826, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007236, Length=238, Percent_Identity=24.3697478991597, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=29.8507462686567, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=30.8457711442786, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648693, Length=239, Percent_Identity=25.9414225941423, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355889, Length=239, Percent_Identity=25.9414225941423, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571387, Length=240, Percent_Identity=27.5, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24643142, Length=224, Percent_Identity=27.6785714285714, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648944, Length=235, Percent_Identity=27.6595744680851, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24640442, Length=186, Percent_Identity=27.9569892473118, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581726, Length=220, Percent_Identity=26.8181818181818, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639444, Length=186, Percent_Identity=26.3440860215054, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24346; Mature: 24215

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQKIVLITGASSGIGKATAKTLVKSGHKVILTARRQEKLDKLVAMLGEDNALAVAADA
CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCEEEEEECC
TQFDALEKVVKAGINKFGRLDVAFANAGTGISISGTEQGDPDEWSKLIDINIKALLWTAK
HHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCCHHHHHHEEEEEEEEEEEEEE
LTLPNLRETKGHFILTSSVAGRTAHKGSIYGASKWFAYGFGQNLAEEMAQWGGRCTTIAP
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHEEECCCHHHHHHHHHHCCEEEEECC
GMVNTAFFDEPKPDKLDPVDVAEAVLFAIEAEQRCNVREIFLMPTH
CCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
TKQKIVLITGASSGIGKATAKTLVKSGHKVILTARRQEKLDKLVAMLGEDNALAVAADA
CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCEEEEEECC
TQFDALEKVVKAGINKFGRLDVAFANAGTGISISGTEQGDPDEWSKLIDINIKALLWTAK
HHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECCCCCCCHHHHHHEEEEEEEEEEEEEE
LTLPNLRETKGHFILTSSVAGRTAHKGSIYGASKWFAYGFGQNLAEEMAQWGGRCTTIAP
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHEEECCCHHHHHHHHHHCCEEEEECC
GMVNTAFFDEPKPDKLDPVDVAEAVLFAIEAEQRCNVREIFLMPTH
CCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]