Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 119944577

GI number: 119944577

Start: 1018461

End: 1018922

Strand: Direct

Name: rimP

Synonym: Ping_0815

Alternate gene names: 119944577

Gene position: 1018461-1018922 (Clockwise)

Preceding gene: 119944576

Following gene: 119944578

Centisome position: 22.34

GC content: 38.53

Gene sequence:

>462_bases
TTGGCAAGTTTAGAAGAACGTCTAACTGAGATGTTAGCACCGAGTGTTGAAGATCTTGGTTACGAATTAGTGGGTGTCGA
ATATATTAGAGCAGGTAAACATTCAACTCTGCGTGTTTATATTGATCAAGATGAAGGCATTTTAGTGGACGACTGTGCGG
CAGTAAGCCGGCAGGTTAGTGCAATTATGGATGTAGAAGATCCTATTACGAATGAATATTCGCTTGAAGTTTCATCTCCA
GGTATGAATCGTCCGCTATTTAAAGCGGAGCATTATCAAATTTTTGCCGGAGAAGAGGTGAAAATACAATTAAGAATGCC
GATTCAAAACCGTCGCAGGTGGAAAGGTGTCATTGTTTCTGCCGAAGATGAAATAATTTGTCTCAATATAGAAGGCAGAG
AAGAGCGTTTTTCATTGAGCAATATTCAAAAGGCGAATATTGTTCCAAAATTTGATAATTAA

Upstream 100 bases:

>100_bases
TTGTATCGCGAAGTGACAACTTATGTTTGTTTTTAATAAACATAAGTTGTTAATTAATTAGGGCTGTATGCCCTTTTTTT
GTTTCTGAAAGGGGATAAGT

Downstream 100 bases:

>100_bases
GGCGATTACAGATGAATAAAGAAATTTTACTTGTAGTAGAGGCGGTCTCTAATGAAAAAGGACTTCCACGTGAAGCTATT
TTTCAAGCTTTAGAAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MASLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEGILVDDCAAVSRQVSAIMDVEDPITNEYSLEVSSP
GMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVSAEDEIICLNIEGREERFSLSNIQKANIVPKFDN

Sequences:

>Translated_153_residues
MASLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEGILVDDCAAVSRQVSAIMDVEDPITNEYSLEVSSP
GMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVSAEDEIICLNIEGREERFSLSNIQKANIVPKFDN
>Mature_152_residues
ASLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEGILVDDCAAVSRQVSAIMDVEDPITNEYSLEVSSPG
MNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVSAEDEIICLNIEGREERFSLSNIQKANIVPKFDN

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=151, Percent_Identity=62.9139072847682, Blast_Score=207, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_PSYIN (A1ST43)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_942257.1
- ProteinModelPortal:   A1ST43
- SMR:   A1ST43
- STRING:   A1ST43
- GeneID:   4625456
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0815
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   VMDVEDP
- PhylomeDB:   A1ST43
- BioCyc:   PING357804:PING_0815-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 17402; Mature: 17271

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEGILVDDCAAVSRQVS
CCCHHHHHHHHHCCCHHHCCEEEEEEEEEECCCCCEEEEEEECCCCEEEEHHHHHHHHHH
AIMDVEDPITNEYSLEVSSPGMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVS
HEECCCCCCCCCEEEEECCCCCCCCCEECCCEEEEECCEEEEEEECCCCCCCCEEEEEEE
AEDEIICLNIEGREERFSLSNIQKANIVPKFDN
CCCCEEEEEECCCCHHCCCCCCCCCCCEECCCC
>Mature Secondary Structure 
ASLEERLTEMLAPSVEDLGYELVGVEYIRAGKHSTLRVYIDQDEGILVDDCAAVSRQVS
CCHHHHHHHHHCCCHHHCCEEEEEEEEEECCCCCEEEEEEECCCCEEEEHHHHHHHHHH
AIMDVEDPITNEYSLEVSSPGMNRPLFKAEHYQIFAGEEVKIQLRMPIQNRRRWKGVIVS
HEECCCCCCCCCEEEEECCCCCCCCCEECCCEEEEECCEEEEEEECCCCCCCCEEEEEEE
AEDEIICLNIEGREERFSLSNIQKANIVPKFDN
CCCCEEEEEECCCCHHCCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA