Click here to switch to the map view.

The map label for this gene is yjjV [H]

Identifier: 119944569

GI number: 119944569

Start: 1010247

End: 1011050

Strand: Direct

Name: yjjV [H]

Synonym: Ping_0807

Alternate gene names: 119944569

Gene position: 1010247-1011050 (Clockwise)

Preceding gene: 119944568

Following gene: 119944570

Centisome position: 22.16

GC content: 38.68

Gene sequence:

>804_bases
ATGAACCTTTTGGCTAAGCTTCGAGGTCTTATGTTTATTGATAGTCACTGCCATCTGAACTTTGCGTGTTTTGATAGTCA
ACGCGAAATGTTGCTGCAACAATTACAACAAAATAATATTACTAAACTTATTATTCCGGCGACCCATAGGGCGAATTGGG
GCGAGATAAGCAGGTTATGTGAAAACCATCCTAATTTGTATTATGCATTAGGGTACCATCCGCATTTTCTTGATTATTTT
AAGCTGGGTGATTTGCAGTATTTACAAACACTGCTTGAAGATAAAAATAGACAGTGTGTTGCACTGGGGGAAATTGGTTT
AGATAAATTTATTAAAACCCCGATTGAGGTTCAAGAGTCTATTTTTACTGAGCAGTTGAAAATAGCACAACAACTTGAAT
TACCGGTTATTTTACACGTTGTAAAAAAACAGGGCCGGGTGCTGGAAATATTACGGCAATTAAACTTTACCCAGGGCGGG
GTTTACCATGCTTTTTCAGGCAGTTACGAGCTGGCTTTAGAGTTTATTAAATTAGGCTTTAAAATCGGGGTTGGCGGCGT
GATAACCTATCCAAATTCGGTTACCACAAGAGAAACAATTTCACGATTACCGCTTGAGTCATTAGTCTTAGAAACCGATG
CGCCCGGTATGCCTATCTACCAACAATATCAGCCTGACAATACACCGCTTAATTTGTTGCATATATTTGAATCTCTGGCG
CTCTTGCGGGGTGAATCAAAAAAATGTTTAGCCTCGCAACTTTATAACAATACTCGTTCATTATTTTCGTTAGACAATGA
CTAA

Upstream 100 bases:

>100_bases
TCTCGACACTCGAAGCTCGAAGCTCGACACTCGAAAGCTCGCAGCTCGCAGCTCGCAGGGTGCGCTCTTCGCCTTTTTTT
AATGTTATTTACAGCTTATA

Downstream 100 bases:

>100_bases
AGCTGAAAATTATCGTAAAATGGGCGCTAATCCCGAGAGTACAAACACAAACATTGTGTCAAAAAAGGTAATTTTTAATG
GTTCAATATCCAATGACAGC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MNLLAKLRGLMFIDSHCHLNFACFDSQREMLLQQLQQNNITKLIIPATHRANWGEISRLCENHPNLYYALGYHPHFLDYF
KLGDLQYLQTLLEDKNRQCVALGEIGLDKFIKTPIEVQESIFTEQLKIAQQLELPVILHVVKKQGRVLEILRQLNFTQGG
VYHAFSGSYELALEFIKLGFKIGVGGVITYPNSVTTRETISRLPLESLVLETDAPGMPIYQQYQPDNTPLNLLHIFESLA
LLRGESKKCLASQLYNNTRSLFSLDND

Sequences:

>Translated_267_residues
MNLLAKLRGLMFIDSHCHLNFACFDSQREMLLQQLQQNNITKLIIPATHRANWGEISRLCENHPNLYYALGYHPHFLDYF
KLGDLQYLQTLLEDKNRQCVALGEIGLDKFIKTPIEVQESIFTEQLKIAQQLELPVILHVVKKQGRVLEILRQLNFTQGG
VYHAFSGSYELALEFIKLGFKIGVGGVITYPNSVTTRETISRLPLESLVLETDAPGMPIYQQYQPDNTPLNLLHIFESLA
LLRGESKKCLASQLYNNTRSLFSLDND
>Mature_267_residues
MNLLAKLRGLMFIDSHCHLNFACFDSQREMLLQQLQQNNITKLIIPATHRANWGEISRLCENHPNLYYALGYHPHFLDYF
KLGDLQYLQTLLEDKNRQCVALGEIGLDKFIKTPIEVQESIFTEQLKIAQQLELPVILHVVKKQGRVLEILRQLNFTQGG
VYHAFSGSYELALEFIKLGFKIGVGGVITYPNSVTTRETISRLPLESLVLETDAPGMPIYQQYQPDNTPLNLLHIFESLA
LLRGESKKCLASQLYNNTRSLFSLDND

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=279, Percent_Identity=28.3154121863799, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI14042943, Length=252, Percent_Identity=26.5873015873016, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI225903439, Length=226, Percent_Identity=28.3185840707965, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=27.8195488721804, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=27.5092936802974, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI226061853, Length=271, Percent_Identity=26.9372693726937, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI226061595, Length=232, Percent_Identity=28.0172413793103, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI226061614, Length=260, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=43.921568627451, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1787342, Length=263, Percent_Identity=29.277566539924, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI48994985, Length=262, Percent_Identity=29.0076335877863, Blast_Score=95, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=27.112676056338, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=264, Percent_Identity=25, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648690, Length=219, Percent_Identity=27.8538812785388, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30538; Mature: 30538

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLAKLRGLMFIDSHCHLNFACFDSQREMLLQQLQQNNITKLIIPATHRANWGEISRLC
CCHHHHHHHHEEEECCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
ENHPNLYYALGYHPHFLDYFKLGDLQYLQTLLEDKNRQCVALGEIGLDKFIKTPIEVQES
HCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEECHHCHHHHHCCHHHHHHH
IFTEQLKIAQQLELPVILHVVKKQGRVLEILRQLNFTQGGVYHAFSGSYELALEFIKLGF
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
KIGVGGVITYPNSVTTRETISRLPLESLVLETDAPGMPIYQQYQPDNTPLNLLHIFESLA
HCCCCCEEECCCCCCHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LLRGESKKCLASQLYNNTRSLFSLDND
HHCCCCHHHHHHHHHHCHHHHEECCCC
>Mature Secondary Structure
MNLLAKLRGLMFIDSHCHLNFACFDSQREMLLQQLQQNNITKLIIPATHRANWGEISRLC
CCHHHHHHHHEEEECCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH
ENHPNLYYALGYHPHFLDYFKLGDLQYLQTLLEDKNRQCVALGEIGLDKFIKTPIEVQES
HCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEECHHCHHHHHCCHHHHHHH
IFTEQLKIAQQLELPVILHVVKKQGRVLEILRQLNFTQGGVYHAFSGSYELALEFIKLGF
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHH
KIGVGGVITYPNSVTTRETISRLPLESLVLETDAPGMPIYQQYQPDNTPLNLLHIFESLA
HCCCCCEEECCCCCCHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
LLRGESKKCLASQLYNNTRSLFSLDND
HHCCCCHHHHHHHHHHCHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]