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The map label for this gene is rfbH [H]

Identifier: 119944541

GI number: 119944541

Start: 974383

End: 975696

Strand: Direct

Name: rfbH [H]

Synonym: Ping_0775

Alternate gene names: 119944541

Gene position: 974383-975696 (Clockwise)

Preceding gene: 119944540

Following gene: 119944542

Centisome position: 21.37

GC content: 39.65

Gene sequence:

>1314_bases
ATGTCTAAAGAATTAATTAGAAAGCAGATCGCAGAATTAGTAGATCAATACGCGGCAATTGAATATGCACCAAAAGAGTT
TGTTGGTGGAGAAACAGTAGTACCACCTTCAGGTAAAGTATTGGGTGCTAATGAACTTAAAATGATGGTCGAAGCATCAT
TAGACGGTTGGTTAACCGCTGGACGTTTTAATGATGCATTTGAGAAGCGTTTAGGTGAATACTTGGGTGTCCCTTATGTC
ATGACGACAACATCAGGCTCTTCAGCAAATTTACTTGCGCTTACCGCGCTTACATCCCCTAAGCTTGGCGATCGTCAATT
AAAACCGGGTGATGAAGTCATTACCGTTGCTGCTGGTTTCCCGACAACGGTAAACCCAATTATCCAAAATGGTCTAATTC
CGGTATTTGTTGATGTTGATATTCCAACTTACAACATAAATGCTAAATTAATTGAAGCAGCTGTAACTGATAAAACTAAA
GCGATTATGATTGCGCATACCTTGGGTAATACATTTGATTTAACAGAAGTGAAACGTGTTACTGATAAACATAACCTTTG
GTTAATTGAAGATTCCTGTGATGCGTTAGGCTCTACTTATAATGGACAAATGGTTGGAACTTTTGGTGATATAGCAACGG
TAAGTTTTTACCCCGCTCACCATATTACTATGGGTGAAGGTGGTGCCGTATTTACTAAAGATAAAGAGCTTCGTAAACTG
CTTGAATCATTCCGCGACTGGGGGCGTGATTGTTATTGCCCGCCAGGCTGTGATAATACTTGTGGTAAGCGATTTGACCA
ACAATTAGGCTCACTGCCACAAGGTTACGACCATAAGTACACCTATTCGCATTTAGGTTACAACCTTAAAATAACAGATA
TGCAGGCCGCTTGTGGTTTAGCGCAAATGGATCGTGTTGAAGAGTTAGTGCAAGCGCGCAAAGATAACTTTAAATATCTA
GTAAAAGGCTTGGCCTCTTGTGAAGAGTTCTTAATTCTACCCGAAGCGACTGAAAATTCAGATCCATCATGGTTTGGCTT
TCCCATTACAATCAAACCAGAAAGTGGTATAGACCGCGTTGAACTGCTTAAATTCATGGATCAGTACAAAATTGGGACAC
GTTTATTATTCGCGGGTAACTTAACGCGTCAGCCCTATTTTGAGAATGTTGAATATCGTGTAGTGGGAGATCTTACTAAT
ACCGATATTATCATGAACCATACTTTCTGGATTGGTGTATACCCTGGTTTATCGACAGATCATTTAGACTTTGTTATTGA
AAAATTTGAAGAGTTTCTTGGTTTGAACTTCTGA

Upstream 100 bases:

>100_bases
ATCGTAACATGGCAGAAAGCTTGGCTTGAAGGTAAAGATATCAAGCAGCATACATTAAACGAAATTAAACAATATATGGC
AATAAGAGCGGGAAATAAAA

Downstream 100 bases:

>100_bases
AAAGGGTGGGAGGCTTTGGCCTCCAAATGAGGATCTGTTTATGGTTATATTTATTTCTGGTGCTTCGGGTTATTTAGGTA
GTCACTTAGTTAAAGCATTA

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSKELIRKQIAELVDQYAAIEYAPKEFVGGETVVPPSGKVLGANELKMMVEASLDGWLTAGRFNDAFEKRLGEYLGVPYV
MTTTSGSSANLLALTALTSPKLGDRQLKPGDEVITVAAGFPTTVNPIIQNGLIPVFVDVDIPTYNINAKLIEAAVTDKTK
AIMIAHTLGNTFDLTEVKRVTDKHNLWLIEDSCDALGSTYNGQMVGTFGDIATVSFYPAHHITMGEGGAVFTKDKELRKL
LESFRDWGRDCYCPPGCDNTCGKRFDQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGLAQMDRVEELVQARKDNFKYL
VKGLASCEEFLILPEATENSDPSWFGFPITIKPESGIDRVELLKFMDQYKIGTRLLFAGNLTRQPYFENVEYRVVGDLTN
TDIIMNHTFWIGVYPGLSTDHLDFVIEKFEEFLGLNF

Sequences:

>Translated_437_residues
MSKELIRKQIAELVDQYAAIEYAPKEFVGGETVVPPSGKVLGANELKMMVEASLDGWLTAGRFNDAFEKRLGEYLGVPYV
MTTTSGSSANLLALTALTSPKLGDRQLKPGDEVITVAAGFPTTVNPIIQNGLIPVFVDVDIPTYNINAKLIEAAVTDKTK
AIMIAHTLGNTFDLTEVKRVTDKHNLWLIEDSCDALGSTYNGQMVGTFGDIATVSFYPAHHITMGEGGAVFTKDKELRKL
LESFRDWGRDCYCPPGCDNTCGKRFDQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGLAQMDRVEELVQARKDNFKYL
VKGLASCEEFLILPEATENSDPSWFGFPITIKPESGIDRVELLKFMDQYKIGTRLLFAGNLTRQPYFENVEYRVVGDLTN
TDIIMNHTFWIGVYPGLSTDHLDFVIEKFEEFLGLNF
>Mature_436_residues
SKELIRKQIAELVDQYAAIEYAPKEFVGGETVVPPSGKVLGANELKMMVEASLDGWLTAGRFNDAFEKRLGEYLGVPYVM
TTTSGSSANLLALTALTSPKLGDRQLKPGDEVITVAAGFPTTVNPIIQNGLIPVFVDVDIPTYNINAKLIEAAVTDKTKA
IMIAHTLGNTFDLTEVKRVTDKHNLWLIEDSCDALGSTYNGQMVGTFGDIATVSFYPAHHITMGEGGAVFTKDKELRKLL
ESFRDWGRDCYCPPGCDNTCGKRFDQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGLAQMDRVEELVQARKDNFKYLV
KGLASCEEFLILPEATENSDPSWFGFPITIKPESGIDRVELLKFMDQYKIGTRLLFAGNLTRQPYFENVEYRVVGDLTNT
DIIMNHTFWIGVYPGLSTDHLDFVIEKFEEFLGLNF

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=404, Percent_Identity=27.970297029703, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI2367285, Length=343, Percent_Identity=28.5714285714286, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 48663; Mature: 48532

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKELIRKQIAELVDQYAAIEYAPKEFVGGETVVPPSGKVLGANELKMMVEASLDGWLTA
CCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEECCCCCCEECHHHHHEEEECCCCCCEEC
GRFNDAFEKRLGEYLGVPYVMTTTSGSSANLLALTALTSPKLGDRQLKPGDEVITVAAGF
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCC
PTTVNPIIQNGLIPVFVDVDIPTYNINAKLIEAAVTDKTKAIMIAHTLGNTFDLTEVKRV
CCCCHHHHHCCCEEEEEEECCCEEECCHHEEEEHHCCCCEEEEEEEECCCCCCHHHHHHH
TDKHNLWLIEDSCDALGSTYNGQMVGTFGDIATVSFYPAHHITMGEGGAVFTKDKELRKL
CCCCCEEEEECCHHHCCCCCCCEEEEECCCEEEEEEECCEEEEECCCCEEEECCHHHHHH
LESFRDWGRDCYCPPGCDNTCGKRFDQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHCCEEEEEECHHHHCCH
AQMDRVEELVQARKDNFKYLVKGLASCEEFLILPEATENSDPSWFGFPITIKPESGIDRV
HHHHHHHHHHHHHHCCHHHHHHHHHCHHHEEEECCCCCCCCCCEEEEEEEECCCCCCCHH
ELLKFMDQYKIGTRLLFAGNLTRQPYFENVEYRVVGDLTNTDIIMNHTFWIGVYPGLSTD
HHHHHHHHHHHCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCCH
HLDFVIEKFEEFLGLNF
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKELIRKQIAELVDQYAAIEYAPKEFVGGETVVPPSGKVLGANELKMMVEASLDGWLTA
CHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEECCCCCCEECHHHHHEEEECCCCCCEEC
GRFNDAFEKRLGEYLGVPYVMTTTSGSSANLLALTALTSPKLGDRQLKPGDEVITVAAGF
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCC
PTTVNPIIQNGLIPVFVDVDIPTYNINAKLIEAAVTDKTKAIMIAHTLGNTFDLTEVKRV
CCCCHHHHHCCCEEEEEEECCCEEECCHHEEEEHHCCCCEEEEEEEECCCCCCHHHHHHH
TDKHNLWLIEDSCDALGSTYNGQMVGTFGDIATVSFYPAHHITMGEGGAVFTKDKELRKL
CCCCCEEEEECCHHHCCCCCCCEEEEECCCEEEEEEECCEEEEECCCCEEEECCHHHHHH
LESFRDWGRDCYCPPGCDNTCGKRFDQQLGSLPQGYDHKYTYSHLGYNLKITDMQAACGL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEHHHCCEEEEEECHHHHCCH
AQMDRVEELVQARKDNFKYLVKGLASCEEFLILPEATENSDPSWFGFPITIKPESGIDRV
HHHHHHHHHHHHHHCCHHHHHHHHHCHHHEEEECCCCCCCCCCEEEEEEEECCCCCCCHH
ELLKFMDQYKIGTRLLFAGNLTRQPYFENVEYRVVGDLTNTDIIMNHTFWIGVYPGLSTD
HHHHHHHHHHHCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCCH
HLDFVIEKFEEFLGLNF
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]