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The map label for this gene is nqrD

Identifier: 119944520

GI number: 119944520

Start: 944542

End: 945174

Strand: Direct

Name: nqrD

Synonym: Ping_0749

Alternate gene names: 119944520

Gene position: 944542-945174 (Clockwise)

Preceding gene: 119944519

Following gene: 119944521

Centisome position: 20.72

GC content: 39.81

Gene sequence:

>633_bases
ATGGCTAAATCTAATGAAATAAAAGCGGTTTTAACCTCGCCAATAATAAGCAATAACCCGATTACCTTACAGATTTTAGG
GATTTGCTCCGCATTAGCCGTAACAAGTAAATTAGAAAACGCCGTTGTAATGACGGTTGCCGTGCTTTTTGTAACTGCAT
TTTCTAACTTTTTTATCTCTACTATTCGTAATTACATTCCCAATAGTGTCCGCATTATTGTACAGATGGCTATTATTGCG
TCTTTGGTAATTGTTGTTGACCAATTCTTGAGAGCATACGCATTTTCGATCTCTAAGCAATTATCAGTATATGTTGGTTT
AATTATCACTAACTGTATTGTAATGGGTCGAGCAGAAGCGTTTGCGATGAAGAATAAACCCATCGCAAGCTTTATGGATG
GCGTCGGAAATGGGCTAGGTTATGGCGTGATTCTTATTCTCGTTGGCGCTTTCCGTGAGTTGTTTGGTTCCGGTTCTTTA
TATGGTTTCGTCATTTTACCCTTAACGTCGAATGGCGGTTGGTATCAAAGTAATGGTTTATTGCTACTAGCACCCAGTGC
TTTCTTTATTGTTGGTGGAATTATCTGGGCTGTCCGGACGATGAGACCAGACCAAGTTGAGCCTAAGGAGTAA

Upstream 100 bases:

>100_bases
ACATTAACCAGTGCTGGTGTTCAAAATACTTTTACTTTTTGGTTCGGAGAGCAGGGCTTTGGTCCATTTCTTAAAAAATT
TCGCCAAGGAGCGCTAACAA

Downstream 100 bases:

>100_bases
GTCAAATGGAACATTATATTAGTATCTTTGTGCGTTCTATTTTCATGGAAAATATGGCACTGGCTTTCTTTTTAGGCATG
TGTACATTCCTTGCGGTTTC

Product: NADH:ubiquinone oxidoreductase, subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MAKSNEIKAVLTSPIISNNPITLQILGICSALAVTSKLENAVVMTVAVLFVTAFSNFFISTIRNYIPNSVRIIVQMAIIA
SLVIVVDQFLRAYAFSISKQLSVYVGLIITNCIVMGRAEAFAMKNKPIASFMDGVGNGLGYGVILILVGAFRELFGSGSL
YGFVILPLTSNGGWYQSNGLLLLAPSAFFIVGGIIWAVRTMRPDQVEPKE

Sequences:

>Translated_210_residues
MAKSNEIKAVLTSPIISNNPITLQILGICSALAVTSKLENAVVMTVAVLFVTAFSNFFISTIRNYIPNSVRIIVQMAIIA
SLVIVVDQFLRAYAFSISKQLSVYVGLIITNCIVMGRAEAFAMKNKPIASFMDGVGNGLGYGVILILVGAFRELFGSGSL
YGFVILPLTSNGGWYQSNGLLLLAPSAFFIVGGIIWAVRTMRPDQVEPKE
>Mature_209_residues
AKSNEIKAVLTSPIISNNPITLQILGICSALAVTSKLENAVVMTVAVLFVTAFSNFFISTIRNYIPNSVRIIVQMAIIAS
LVIVVDQFLRAYAFSISKQLSVYVGLIITNCIVMGRAEAFAMKNKPIASFMDGVGNGLGYGVILILVGAFRELFGSGSLY
GFVILPLTSNGGWYQSNGLLLLAPSAFFIVGGIIWAVRTMRPDQVEPKE

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787919, Length=157, Percent_Identity=41.4012738853503, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NQRD_PSYIN (A1SSY6)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_942200.1
- STRING:   A1SSY6
- GeneID:   4623667
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0749
- eggNOG:   COG1347
- HOGENOM:   HBG624915
- OMA:   GGWYVPN
- PhylomeDB:   A1SSY6
- BioCyc:   PING357804:PING_0749-MONOMER
- HAMAP:   MF_00428
- InterPro:   IPR003667
- InterPro:   IPR011292
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01939

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 22617; Mature: 22486

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x16aab574)-; HASH(0x16bcdb08)-; HASH(0x1696bcd0)-; HASH(0x16a98cc8)-; HASH(0x16038ab4)-; HASH(0x166e907c)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSNEIKAVLTSPIISNNPITLQILGICSALAVTSKLENAVVMTVAVLFVTAFSNFFIS
CCCCCCHHHEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIRNYIPNSVRIIVQMAIIASLVIVVDQFLRAYAFSISKQLSVYVGLIITNCIVMGRAEA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FAMKNKPIASFMDGVGNGLGYGVILILVGAFRELFGSGSLYGFVILPLTSNGGWYQSNGL
HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEECCCE
LLLAPSAFFIVGGIIWAVRTMRPDQVEPKE
EEECCHHHHHHHHHHHHHHHCCCCCCCCCH
>Mature Secondary Structure 
AKSNEIKAVLTSPIISNNPITLQILGICSALAVTSKLENAVVMTVAVLFVTAFSNFFIS
CCCCCHHHEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIRNYIPNSVRIIVQMAIIASLVIVVDQFLRAYAFSISKQLSVYVGLIITNCIVMGRAEA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FAMKNKPIASFMDGVGNGLGYGVILILVGAFRELFGSGSLYGFVILPLTSNGGWYQSNGL
HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEECCCE
LLLAPSAFFIVGGIIWAVRTMRPDQVEPKE
EEECCHHHHHHHHHHHHHHHCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA