| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is clpA [H]
Identifier: 119944514
GI number: 119944514
Start: 937255
End: 939513
Strand: Direct
Name: clpA [H]
Synonym: Ping_0743
Alternate gene names: 119944514
Gene position: 937255-939513 (Clockwise)
Preceding gene: 119944513
Following gene: 119944516
Centisome position: 20.56
GC content: 40.77
Gene sequence:
>2259_bases ATGTTGGACAAAGCGTTGGAAAACAGTTTAGATTTGGCTTTTCGTATTGCCTTTGAAAAATCGCATGAATTTATGACGGT TGAGCATTTATTATTAGCATTATTAGAAAATGACGAAATTAAAAATTTATTTACCGCTTGCTCGGTGGATATTGTCTCTT TGCATTTAGAGATTATTACGTTTTTAGAAAAAAGCCCTGCGATACCCGAAGTGCATACTCAGGAGGTTGAAATTCAGCCA ACCATCGCTTTTGAGCGTGTCTTGCAGCGGGCTATTTTTCATGTGCAATCTTCCGGATCGAAGGAAGTTTCAGCTGGCAG TGTATTAGTGGCTATTTTTAGTGAACAAGAATCTCAAGCTGTTTATCTTTTAAAAAAAGCCCACCTGTCCCGTTTAGATG TTGTTAATTATCTGTCACACGGAATCACTAACGCCGCGGAGTCTATTATTCCTATTTTCCGCGCAGAAGAACAGGGTGAT ACAAAAGAGCAAGATCCGGAGAAGATGGCCTATACGATTAACTTAAATAAACAAGTTGAAGCGGGGGAAATTGATCCGTT AATAGGTCGAGATAAAGAGCTTGAACGTTGTATACAAGTGTTATGCCGCCGCCGTAAAAACAACCCATTATTGGTTGGGG AAGCAGGGGTTGGGAAAACCGCCATTGCTGAAGGACTCGCTTACCGCATTGTGCATGAAAAGGTACCGGAAGTTATTGCC GATAATATTGTTTATTCGTTAGACATGGGCGCCTTGCTCGCAGGTACAAAATACCGGGGCGAGTTTGAGTTGCGTTTTAA AACAGTATTAGCACAACTTGAGTCCCAGGAAGGGGCTATTTTATTTATCGATGAAATTCATACTATTATAGGTGCCGGTG CTGCAACGGGCGGACAACTTGATGCCGCAAATTTGTTAAAACCTTTACTTAGTGGTGGCAAACTTCGTTGTATGGGATCA ACAACGTATAAAGAGTTTGGGCAAATTTTTGAAAAAGAACATGCATTATCACGGCGTTTTCAAAAAATTGATGTACTCGA GCCTACTATTCAAGAAACGGCGCAAATATTACTCGGATTAAGATCCCGTTACGAGAAACATCATCATATTCTCTATACTA ATGAAGCGCTGATGGCCGCTGCAGAACTCAGTGCGAAATATATTAATGATCGCCATCTCCCGGATAAAGCCATTGATGTA ATTGATGAGGCTGGGGCGCAAATGCGTTTATTACCCGCCGGTAAACGTAAAAAAACAGTGGGTGTAACTGACATTGAAAG CGTGATTGCCAAAATTGCACGCATTCCGGAACAATCAGTGTCCAGTTCGGCAAAAGAACAATTAGCTAAATTACCAGAAC GTTTGAAAATGACGGTGTTTGGTCAAAATCAGGCGATTGATGTATTAACCGATGCCATTCATTTAAATCGCTCCGGATTA TCCGATGAGTCAAAACCAATAGGCTCATTTCTGTTTGCAGGTCCTACGGGTGTCGGTAAAACTGAAGTGACACAACAACT TGCTAAGGCTATGGGAATAGAACTTTTACGTTTCGATATGTCAGAATACATGGAAAAGCATACGGTTTCGCGCCTGTTAG GAGCACCTCCTGGTTATGTTGGTTATGAACAGGCGGGGTTATTAACCGATGCGGTTGTTAAACACCCTTATGCAGTATTG TTGCTCGATGAAATAGAAAAAGCACACAGTGATATATTCAATATATTACTACAAGTCATGGATCACGGGACGTTAACCGA CAGTAATGGTCGTAAAGCTGACTTTAGGAATATTATTTTAGTGATGACAACCAATGCCGGCGCGCGAGAAACCGCTAAAC AGAGCATCGGGTTTAAAGATCAAAAAGATTCGCACAAAGCGACGGATGAAATAAATAAATTATTTTCACCTGAATTTAGA AATCGTCTTGATAATATTATTTGGTTTAACCATCTTGAAATAGAGATCATTTATCAAGTGGTCGATAAATTTATTGTGCA GTTACAAGCACAGCTTGATAAAAAGCAGATTTCATTGGAAGTCAGCGACAGTGCTAGAAAATGGATAGCGGATCATGGTT ATGATAGGACGATGGGAGCACGGCCGATGGGGCGTTTGATCCAAGAAAAGTTGAAAAAACCATTAGCCAATGAGATTTTA TTTGGTGAACTGCAACAGGGTGGAAGCGTGACTGTCTCGTTAGATAAAGATGGTCAGGACATTAGTTTCAGTTATGCACA AACCCTCGCGCTAACATAA
Upstream 100 bases:
>100_bases TGCTCTATGGAAAAAGAAAGTTAAGTGATCTGTATTATTAGTAGTTTTAAGTTGTTAATAAGACTCTGATTTTTTGTTAT TAACTCCTAAGGGGCTTTAT
Downstream 100 bases:
>100_bases TATTTACTGCAAAAAACAAAAAACCAGCTTAAAGCTGGTTTTTTTATTTTTTGCAGTAAATAAAAACTGTCTACTGAAAA AGGTAACATATTAACGAGCA
Product: ATP-dependent Clp protease, ATP-binding subunit clpA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 752; Mature: 752
Protein sequence:
>752_residues MLDKALENSLDLAFRIAFEKSHEFMTVEHLLLALLENDEIKNLFTACSVDIVSLHLEIITFLEKSPAIPEVHTQEVEIQP TIAFERVLQRAIFHVQSSGSKEVSAGSVLVAIFSEQESQAVYLLKKAHLSRLDVVNYLSHGITNAAESIIPIFRAEEQGD TKEQDPEKMAYTINLNKQVEAGEIDPLIGRDKELERCIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAYRIVHEKVPEVIA DNIVYSLDMGALLAGTKYRGEFELRFKTVLAQLESQEGAILFIDEIHTIIGAGAATGGQLDAANLLKPLLSGGKLRCMGS TTYKEFGQIFEKEHALSRRFQKIDVLEPTIQETAQILLGLRSRYEKHHHILYTNEALMAAAELSAKYINDRHLPDKAIDV IDEAGAQMRLLPAGKRKKTVGVTDIESVIAKIARIPEQSVSSSAKEQLAKLPERLKMTVFGQNQAIDVLTDAIHLNRSGL SDESKPIGSFLFAGPTGVGKTEVTQQLAKAMGIELLRFDMSEYMEKHTVSRLLGAPPGYVGYEQAGLLTDAVVKHPYAVL LLDEIEKAHSDIFNILLQVMDHGTLTDSNGRKADFRNIILVMTTNAGARETAKQSIGFKDQKDSHKATDEINKLFSPEFR NRLDNIIWFNHLEIEIIYQVVDKFIVQLQAQLDKKQISLEVSDSARKWIADHGYDRTMGARPMGRLIQEKLKKPLANEIL FGELQQGGSVTVSLDKDGQDISFSYAQTLALT
Sequences:
>Translated_752_residues MLDKALENSLDLAFRIAFEKSHEFMTVEHLLLALLENDEIKNLFTACSVDIVSLHLEIITFLEKSPAIPEVHTQEVEIQP TIAFERVLQRAIFHVQSSGSKEVSAGSVLVAIFSEQESQAVYLLKKAHLSRLDVVNYLSHGITNAAESIIPIFRAEEQGD TKEQDPEKMAYTINLNKQVEAGEIDPLIGRDKELERCIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAYRIVHEKVPEVIA DNIVYSLDMGALLAGTKYRGEFELRFKTVLAQLESQEGAILFIDEIHTIIGAGAATGGQLDAANLLKPLLSGGKLRCMGS TTYKEFGQIFEKEHALSRRFQKIDVLEPTIQETAQILLGLRSRYEKHHHILYTNEALMAAAELSAKYINDRHLPDKAIDV IDEAGAQMRLLPAGKRKKTVGVTDIESVIAKIARIPEQSVSSSAKEQLAKLPERLKMTVFGQNQAIDVLTDAIHLNRSGL SDESKPIGSFLFAGPTGVGKTEVTQQLAKAMGIELLRFDMSEYMEKHTVSRLLGAPPGYVGYEQAGLLTDAVVKHPYAVL LLDEIEKAHSDIFNILLQVMDHGTLTDSNGRKADFRNIILVMTTNAGARETAKQSIGFKDQKDSHKATDEINKLFSPEFR NRLDNIIWFNHLEIEIIYQVVDKFIVQLQAQLDKKQISLEVSDSARKWIADHGYDRTMGARPMGRLIQEKLKKPLANEIL FGELQQGGSVTVSLDKDGQDISFSYAQTLALT >Mature_752_residues MLDKALENSLDLAFRIAFEKSHEFMTVEHLLLALLENDEIKNLFTACSVDIVSLHLEIITFLEKSPAIPEVHTQEVEIQP TIAFERVLQRAIFHVQSSGSKEVSAGSVLVAIFSEQESQAVYLLKKAHLSRLDVVNYLSHGITNAAESIIPIFRAEEQGD TKEQDPEKMAYTINLNKQVEAGEIDPLIGRDKELERCIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAYRIVHEKVPEVIA DNIVYSLDMGALLAGTKYRGEFELRFKTVLAQLESQEGAILFIDEIHTIIGAGAATGGQLDAANLLKPLLSGGKLRCMGS TTYKEFGQIFEKEHALSRRFQKIDVLEPTIQETAQILLGLRSRYEKHHHILYTNEALMAAAELSAKYINDRHLPDKAIDV IDEAGAQMRLLPAGKRKKTVGVTDIESVIAKIARIPEQSVSSSAKEQLAKLPERLKMTVFGQNQAIDVLTDAIHLNRSGL SDESKPIGSFLFAGPTGVGKTEVTQQLAKAMGIELLRFDMSEYMEKHTVSRLLGAPPGYVGYEQAGLLTDAVVKHPYAVL LLDEIEKAHSDIFNILLQVMDHGTLTDSNGRKADFRNIILVMTTNAGARETAKQSIGFKDQKDSHKATDEINKLFSPEFR NRLDNIIWFNHLEIEIIYQVVDKFIVQLQAQLDKKQISLEVSDSARKWIADHGYDRTMGARPMGRLIQEKLKKPLANEIL FGELQQGGSVTVSLDKDGQDISFSYAQTLALT
Specific function: ATP-dependent specificity component of the ClpP protease. It directs the protease to specific substrates. The primary function of the ClpA-ClpP complex appears to be the degradation of unfolded or abnormal proteins [H]
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=175, Percent_Identity=41.1428571428571, Blast_Score=149, Evalue=1e-35, Organism=Escherichia coli, GI1787109, Length=750, Percent_Identity=66.2666666666667, Blast_Score=1029, Evalue=0.0, Organism=Escherichia coli, GI1788943, Length=416, Percent_Identity=43.75, Blast_Score=303, Evalue=3e-83, Organism=Saccharomyces cerevisiae, GI6320464, Length=321, Percent_Identity=43.9252336448598, Blast_Score=282, Evalue=1e-76, Organism=Saccharomyces cerevisiae, GI6323002, Length=401, Percent_Identity=36.9077306733167, Blast_Score=242, Evalue=1e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR013461 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 83611; Mature: 83611
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDKALENSLDLAFRIAFEKSHEFMTVEHLLLALLENDEIKNLFTACSVDIVSLHLEIIT CCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH FLEKSPAIPEVHTQEVEIQPTIAFERVLQRAIFHVQSSGSKEVSAGSVLVAIFSEQESQA HHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHH VYLLKKAHLSRLDVVNYLSHGITNAAESIIPIFRAEEQGDTKEQDPEKMAYTINLNKQVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCC AGEIDPLIGRDKELERCIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAYRIVHEKVPEVIA CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH DNIVYSLDMGALLAGTKYRGEFELRFKTVLAQLESQEGAILFIDEIHTIIGAGAATGGQL HHHHEEECCCHHHCCCCCCCEEEHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCC DAANLLKPLLSGGKLRCMGSTTYKEFGQIFEKEHALSRRFQKIDVLEPTIQETAQILLGL CHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH RSRYEKHHHILYTNEALMAAAELSAKYINDRHLPDKAIDVIDEAGAQMRLLPAGKRKKTV HHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC GVTDIESVIAKIARIPEQSVSSSAKEQLAKLPERLKMTVFGQNQAIDVLTDAIHLNRSGL CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCC SDESKPIGSFLFAGPTGVGKTEVTQQLAKAMGIELLRFDMSEYMEKHTVSRLLGAPPGYV CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCC GYEQAGLLTDAVVKHPYAVLLLDEIEKAHSDIFNILLQVMDHGTLTDSNGRKADFRNIIL CCHHHCHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEE VMTTNAGARETAKQSIGFKDQKDSHKATDEINKLFSPEFRNRLDNIIWFNHLEIEIIYQV EEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHEEEECCCHHHHHHHH VDKFIVQLQAQLDKKQISLEVSDSARKWIADHGYDRTMGARPMGRLIQEKLKKPLANEIL HHHHHHHHHHHCCHHHEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHH FGELQQGGSVTVSLDKDGQDISFSYAQTLALT HHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC >Mature Secondary Structure MLDKALENSLDLAFRIAFEKSHEFMTVEHLLLALLENDEIKNLFTACSVDIVSLHLEIIT CCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH FLEKSPAIPEVHTQEVEIQPTIAFERVLQRAIFHVQSSGSKEVSAGSVLVAIFSEQESQA HHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHH VYLLKKAHLSRLDVVNYLSHGITNAAESIIPIFRAEEQGDTKEQDPEKMAYTINLNKQVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCC AGEIDPLIGRDKELERCIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAYRIVHEKVPEVIA CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH DNIVYSLDMGALLAGTKYRGEFELRFKTVLAQLESQEGAILFIDEIHTIIGAGAATGGQL HHHHEEECCCHHHCCCCCCCEEEHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCC DAANLLKPLLSGGKLRCMGSTTYKEFGQIFEKEHALSRRFQKIDVLEPTIQETAQILLGL CHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH RSRYEKHHHILYTNEALMAAAELSAKYINDRHLPDKAIDVIDEAGAQMRLLPAGKRKKTV HHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC GVTDIESVIAKIARIPEQSVSSSAKEQLAKLPERLKMTVFGQNQAIDVLTDAIHLNRSGL CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHCCCCC SDESKPIGSFLFAGPTGVGKTEVTQQLAKAMGIELLRFDMSEYMEKHTVSRLLGAPPGYV CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCC GYEQAGLLTDAVVKHPYAVLLLDEIEKAHSDIFNILLQVMDHGTLTDSNGRKADFRNIIL CCHHHCHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEE VMTTNAGARETAKQSIGFKDQKDSHKATDEINKLFSPEFRNRLDNIIWFNHLEIEIIYQV EEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHEEEECCCHHHHHHHH VDKFIVQLQAQLDKKQISLEVSDSARKWIADHGYDRTMGARPMGRLIQEKLKKPLANEIL HHHHHHHHHHHCCHHHEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHH FGELQQGGSVTVSLDKDGQDISFSYAQTLALT HHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]