Click here to switch to the map view.

The map label for this gene is nrdD [H]

Identifier: 119944511

GI number: 119944511

Start: 933858

End: 935972

Strand: Direct

Name: nrdD [H]

Synonym: Ping_0740

Alternate gene names: 119944511

Gene position: 933858-935972 (Clockwise)

Preceding gene: 119944510

Following gene: 119944512

Centisome position: 20.48

GC content: 40.71

Gene sequence:

>2115_bases
ATGACAAAAATCGTAATAAAGCGTGATGGTGCTAAAGCTGTCTTTAAATCTGTTTTTATTGCTAATGCTGTCAATGCCGC
TGTTGAACAATCAGGTGTACAGAAACCCAATCTTGGTAGCGAAATATCCAAAAAAGTGGAATATTTACTGGCAGATGCTA
AAGAAGTCAGCATTCAAGCAATTCAACACATGGTTGAGTCTGAGTTAATGGATAGAGATCCTAGCGTTGCGCGAGCATAC
ATTGAATACAGACATGACAGAGATATTGAGCGTGAAAAGAAAAGTTTACTGAATAATGAGATTCAGGGGCTTGTTGAACA
AAGCAATGCGGATTTACTGAATGAAAATGCCAATAAAGACAGTAAAGTGATTCCAACACAACGTGATCTGCTCGCGGGTA
TTGTGTCCAGACATTATGCACGAAATCATATGTTACCGCGTGACATCGTTAAAGCGCATGACGAGGGTGATATTCATTAT
CACGATTTAGATTACGCTCCCTTTTTTCCAATGTTTAACTGTATGATTGTTGATTTAAATAATATGTTAAACCAAGGTTT
TCGCATGGGTAATGCTGAAATTGACACCCCTAAATCAATTCAAACAGCAACGGCAGTGACAGCCCAAATCGTGGCTCAGG
TAGCAAGTCATACCTATGGCGGCACAACACTGAATCGCCTTGATCAGGTGCTGGCTTCCTACGTAACAGCAAGTTACTGC
AAACATTTAAAAGTAGCTGAGGAGTGGCAAATTTCGGCGCCTGAAGCTTTTGCAAAATCGCGCACAGAAAAAGAATGTTT
TGATGCTTTTCAGTCACTTGAGTATGAAATTAACACTTTGTTTTCGAGTAACGGGCAGACACCGTTTTTGAGCATTGGTT
TTGGCCTTGGCACGTCATGGGAAGAACGATTAATTCAAAAAGCGATATTAAAGAACCGCCTGGCGGGGTTAGGTAAAAGT
AAAAAGACCGCTATTTTCCCTAAATTAGTGTTTAGCATTAAAGACGGCGTGAATCATAAGAAAGGCGATCCAAACTATGA
TATCAAACAGCTGGCTTTAGAGTGTGCTTCAAAACGCATGTACCCGGACATATTAAATTATGAGCAGATAGTTGCAGTGA
CGGGCTCATTTAAAGCGCCTATGGGCTGTCGTTCATTCCTGGGGCCTTATCAGGAAAATGGCAAAGAAATACATGAAGGC
CGTAATAATCTTGGTGTCGTAAGTATTAATCTGCCGCGTATTGCCATGGCAGCAAAAGGCGATGAAATTGTCTTCTTTGA
TCTCCTTGAGCAGCGCTTACAGTTATGCCGTAAAGCGCTTGATACGCGCATAGAGAGACTTCGTGGTGTCAAGGCCCGGG
TTGCGCCAATCCTTTATATGGAAGGGGCATGTGGTATACGCTTAAAAGCGGATGATGATATTTTGAATATTTTTAAACAG
GGTCGTGCTTCTATTTCATTGGGTTACATTGGCATCCATGAAACGATTAATGCGCTTTATAATACAAAAGATATTTATGA
TAGTGCCGAATTGCGTCAAAAAGGTTTGGCAATTGTACAAAAATTAAGGGATGCCGTTGATGCCTGGAAGGAAGAGTCTG
GCTGGGGCTTCTCTTTATACAGCACGCCGAGTGAAAATTTATGTACTCGATTCTGCAAACTGGATACTAAGATTTATGGT
ATTAAAAAAGGAGTGACTGACAAGGGATACTATACCAACAGCTTCCACTTAGATGTTGAGAAAAAAGTTAATCCATTTGA
TAAATTAGATTTTGAAATGGATTATCCAAAAATCGCCAATGGCGGGTTTATTTGTTATAGCGAATATCCAAATATGCAGC
ACAATTTAGAAGCGCTGGAGAATGTTTGGGATTATTCCTATCAGCGAGTCCCTTATTATGGGACTAATACCCCCATTGAT
GAATGTTATGACTGTGGTTTTAGTGGCGAGTTTAACTGTACCAGTAAAGGTTTTGCCTGTCCTAAATGCGGTAATCATGA
CAGTGCCAGCATATCTGTTATTCGCCGAGTCTGTGGTTATTTAGGCAGCCCGGACACTCGGCCCTTTAATACGGGTAAAC
AAGAAGAAGTTAAACGCCGTGTGAAACACTTATAA

Upstream 100 bases:

>100_bases
TAGCATTGAGTGCTGTTTTCATATTGAAGCTATATTGAAGCTATATTGAAGCGATACAAAAGATATAAAAAAGTTAATGA
CTGTAAAAGGAACATTTTAA

Downstream 100 bases:

>100_bases
TGTATTACAGTGCTTATCATCAAGTTGATGTGGTTAATGGTACTGGCACGCGCTGTACCTTGTTTGTCAGTGGCTGCGAG
CATCAATGTCGCGGCTGCTA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 704; Mature: 703

Protein sequence:

>704_residues
MTKIVIKRDGAKAVFKSVFIANAVNAAVEQSGVQKPNLGSEISKKVEYLLADAKEVSIQAIQHMVESELMDRDPSVARAY
IEYRHDRDIEREKKSLLNNEIQGLVEQSNADLLNENANKDSKVIPTQRDLLAGIVSRHYARNHMLPRDIVKAHDEGDIHY
HDLDYAPFFPMFNCMIVDLNNMLNQGFRMGNAEIDTPKSIQTATAVTAQIVAQVASHTYGGTTLNRLDQVLASYVTASYC
KHLKVAEEWQISAPEAFAKSRTEKECFDAFQSLEYEINTLFSSNGQTPFLSIGFGLGTSWEERLIQKAILKNRLAGLGKS
KKTAIFPKLVFSIKDGVNHKKGDPNYDIKQLALECASKRMYPDILNYEQIVAVTGSFKAPMGCRSFLGPYQENGKEIHEG
RNNLGVVSINLPRIAMAAKGDEIVFFDLLEQRLQLCRKALDTRIERLRGVKARVAPILYMEGACGIRLKADDDILNIFKQ
GRASISLGYIGIHETINALYNTKDIYDSAELRQKGLAIVQKLRDAVDAWKEESGWGFSLYSTPSENLCTRFCKLDTKIYG
IKKGVTDKGYYTNSFHLDVEKKVNPFDKLDFEMDYPKIANGGFICYSEYPNMQHNLEALENVWDYSYQRVPYYGTNTPID
ECYDCGFSGEFNCTSKGFACPKCGNHDSASISVIRRVCGYLGSPDTRPFNTGKQEEVKRRVKHL

Sequences:

>Translated_704_residues
MTKIVIKRDGAKAVFKSVFIANAVNAAVEQSGVQKPNLGSEISKKVEYLLADAKEVSIQAIQHMVESELMDRDPSVARAY
IEYRHDRDIEREKKSLLNNEIQGLVEQSNADLLNENANKDSKVIPTQRDLLAGIVSRHYARNHMLPRDIVKAHDEGDIHY
HDLDYAPFFPMFNCMIVDLNNMLNQGFRMGNAEIDTPKSIQTATAVTAQIVAQVASHTYGGTTLNRLDQVLASYVTASYC
KHLKVAEEWQISAPEAFAKSRTEKECFDAFQSLEYEINTLFSSNGQTPFLSIGFGLGTSWEERLIQKAILKNRLAGLGKS
KKTAIFPKLVFSIKDGVNHKKGDPNYDIKQLALECASKRMYPDILNYEQIVAVTGSFKAPMGCRSFLGPYQENGKEIHEG
RNNLGVVSINLPRIAMAAKGDEIVFFDLLEQRLQLCRKALDTRIERLRGVKARVAPILYMEGACGIRLKADDDILNIFKQ
GRASISLGYIGIHETINALYNTKDIYDSAELRQKGLAIVQKLRDAVDAWKEESGWGFSLYSTPSENLCTRFCKLDTKIYG
IKKGVTDKGYYTNSFHLDVEKKVNPFDKLDFEMDYPKIANGGFICYSEYPNMQHNLEALENVWDYSYQRVPYYGTNTPID
ECYDCGFSGEFNCTSKGFACPKCGNHDSASISVIRRVCGYLGSPDTRPFNTGKQEEVKRRVKHL
>Mature_703_residues
TKIVIKRDGAKAVFKSVFIANAVNAAVEQSGVQKPNLGSEISKKVEYLLADAKEVSIQAIQHMVESELMDRDPSVARAYI
EYRHDRDIEREKKSLLNNEIQGLVEQSNADLLNENANKDSKVIPTQRDLLAGIVSRHYARNHMLPRDIVKAHDEGDIHYH
DLDYAPFFPMFNCMIVDLNNMLNQGFRMGNAEIDTPKSIQTATAVTAQIVAQVASHTYGGTTLNRLDQVLASYVTASYCK
HLKVAEEWQISAPEAFAKSRTEKECFDAFQSLEYEINTLFSSNGQTPFLSIGFGLGTSWEERLIQKAILKNRLAGLGKSK
KTAIFPKLVFSIKDGVNHKKGDPNYDIKQLALECASKRMYPDILNYEQIVAVTGSFKAPMGCRSFLGPYQENGKEIHEGR
NNLGVVSINLPRIAMAAKGDEIVFFDLLEQRLQLCRKALDTRIERLRGVKARVAPILYMEGACGIRLKADDDILNIFKQG
RASISLGYIGIHETINALYNTKDIYDSAELRQKGLAIVQKLRDAVDAWKEESGWGFSLYSTPSENLCTRFCKLDTKIYGI
KKGVTDKGYYTNSFHLDVEKKVNPFDKLDFEMDYPKIANGGFICYSEYPNMQHNLEALENVWDYSYQRVPYYGTNTPIDE
CYDCGFSGEFNCTSKGFACPKCGNHDSASISVIRRVCGYLGSPDTRPFNTGKQEEVKRRVKHL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=706, Percent_Identity=72.5212464589235, Blast_Score=1105, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 79255; Mature: 79124

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIVIKRDGAKAVFKSVFIANAVNAAVEQSGVQKPNLGSEISKKVEYLLADAKEVSIQA
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IQHMVESELMDRDPSVARAYIEYRHDRDIEREKKSLLNNEIQGLVEQSNADLLNENANKD
HHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
SKVIPTQRDLLAGIVSRHYARNHMLPRDIVKAHDEGDIHYHDLDYAPFFPMFNCMIVDLN
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHEEEHH
NMLNQGFRMGNAEIDTPKSIQTATAVTAQIVAQVASHTYGGTTLNRLDQVLASYVTASYC
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KHLKVAEEWQISAPEAFAKSRTEKECFDAFQSLEYEINTLFSSNGQTPFLSIGFGLGTSW
HHCCHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH
EERLIQKAILKNRLAGLGKSKKTAIFPKLVFSIKDGVNHKKGDPNYDIKQLALECASKRM
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
YPDILNYEQIVAVTGSFKAPMGCRSFLGPYQENGKEIHEGRNNLGVVSINLPRIAMAAKG
CHHHCCCHHEEEEECCCCCCCCHHHHCCCHHHCCHHHHCCCCCEEEEEEECCEEEEECCC
DEIVFFDLLEQRLQLCRKALDTRIERLRGVKARVAPILYMEGACGIRLKADDDILNIFKQ
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEECCCCCEEEECCHHHHHHHHC
GRASISLGYIGIHETINALYNTKDIYDSAELRQKGLAIVQKLRDAVDAWKEESGWGFSLY
CCCEEEEEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
STPSENLCTRFCKLDTKIYGIKKGVTDKGYYTNSFHLDVEKKVNPFDKLDFEMDYPKIAN
CCCCHHHHHHHHHHCCHHEEHHCCCCCCCEECCEEEEEECCCCCCHHHCCCCCCCCEECC
GGFICYSEYPNMQHNLEALENVWDYSYQRVPYYGTNTPIDECYDCGFSGEFNCTSKGFAC
CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
PKCGNHDSASISVIRRVCGYLGSPDTRPFNTGKQEEVKRRVKHL
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TKIVIKRDGAKAVFKSVFIANAVNAAVEQSGVQKPNLGSEISKKVEYLLADAKEVSIQA
CEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IQHMVESELMDRDPSVARAYIEYRHDRDIEREKKSLLNNEIQGLVEQSNADLLNENANKD
HHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
SKVIPTQRDLLAGIVSRHYARNHMLPRDIVKAHDEGDIHYHDLDYAPFFPMFNCMIVDLN
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHEEEHH
NMLNQGFRMGNAEIDTPKSIQTATAVTAQIVAQVASHTYGGTTLNRLDQVLASYVTASYC
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KHLKVAEEWQISAPEAFAKSRTEKECFDAFQSLEYEINTLFSSNGQTPFLSIGFGLGTSW
HHCCHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCH
EERLIQKAILKNRLAGLGKSKKTAIFPKLVFSIKDGVNHKKGDPNYDIKQLALECASKRM
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
YPDILNYEQIVAVTGSFKAPMGCRSFLGPYQENGKEIHEGRNNLGVVSINLPRIAMAAKG
CHHHCCCHHEEEEECCCCCCCCHHHHCCCHHHCCHHHHCCCCCEEEEEEECCEEEEECCC
DEIVFFDLLEQRLQLCRKALDTRIERLRGVKARVAPILYMEGACGIRLKADDDILNIFKQ
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEECCCCCEEEECCHHHHHHHHC
GRASISLGYIGIHETINALYNTKDIYDSAELRQKGLAIVQKLRDAVDAWKEESGWGFSLY
CCCEEEEEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
STPSENLCTRFCKLDTKIYGIKKGVTDKGYYTNSFHLDVEKKVNPFDKLDFEMDYPKIAN
CCCCHHHHHHHHHHCCHHEEHHCCCCCCCEECCEEEEEECCCCCCHHHCCCCCCCCEECC
GGFICYSEYPNMQHNLEALENVWDYSYQRVPYYGTNTPIDECYDCGFSGEFNCTSKGFAC
CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
PKCGNHDSASISVIRRVCGYLGSPDTRPFNTGKQEEVKRRVKHL
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]