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The map label for this gene is ybgF [H]

Identifier: 119944500

GI number: 119944500

Start: 921841

End: 922608

Strand: Direct

Name: ybgF [H]

Synonym: Ping_0729

Alternate gene names: 119944500

Gene position: 921841-922608 (Clockwise)

Preceding gene: 119944499

Following gene: 119944501

Centisome position: 20.22

GC content: 39.97

Gene sequence:

>768_bases
ATGAAAAAAAATAATCTTCAAATGGCTATTATTCTGGCCACTTTTTTTTCAAGCTCCACTTTTGCTACTGCACCCGTCAG
TGACGTAACTGGCTCTGCGAGTGGCGTAACTGGGTCTGTCAGTGTCGTAACAGCCGCAGAAGGAGTGAGTGTTGAAAAAC
AATTAGAAAAGTTTGCTCGTCTATTGGAATCACGTAATAGAATGCAAATCATCATGCAAAACCAATTGACTCAACTATCT
AAAGAGTTGAGAGAAATTAAGGGGGGCATGGAGCTGTTTGAGCATAAAATCAGTGAGATTGAAAATCGCCAACGTAATCT
ATACCAACTGGTTGACCAGCCTAAGGCCGTCTCAACCCCTACTACTGCTAATAGCACTGCAACCGCAAGTTCTGCAGGTG
AACAATTGGCCTATCAAGCTGCTGTGGATTTGGTTTTAGTTAATAAGGATTATGATCAGGCAATTACTGCTTTTGAGGCA
TTTGTTATTGATTATCCGGAATCCGAATATATCGCAAATTCTCATTATTGGTTGGGGCTAGTATTATATCAGCAGAAAAA
ACGTAAAGAAGCGCGCGTCGCTTTCCTGACGGTGAGTGAAAAGTTTCCCGAGTCGGTTAAACGTGCGGATTCTTTATTTA
AAATAGGTATTATTGATGAATATTTGGGAGAATTAGCTTCGGCAAAAGAGTTTTATCAAAAAGTGTTAAAAGAATACCCA
AATTCATCGGCCGCAGGGCTCGCACAAAAACAATTAAATGCTTTATAA

Upstream 100 bases:

>100_bases
TAGCGTTGTAAGCTACGGTGAAGAAAAACCGCTTAACTTTGGACATTCTGAAGCTTCTTGGGCAGATAACCGCCGCGCAG
AACTGGTTTATTAATAATAA

Downstream 100 bases:

>100_bases
ATACGATTAGGATTTAATCATATAACAAGTTGCAATCCCCGTTGTTTTGCAATTTGTTTACTTTGTCGGCAAACAGAAAA
AAAACAAGCGTTTTTTGTTG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKKNNLQMAIILATFFSSSTFATAPVSDVTGSASGVTGSVSVVTAAEGVSVEKQLEKFARLLESRNRMQIIMQNQLTQLS
KELREIKGGMELFEHKISEIENRQRNLYQLVDQPKAVSTPTTANSTATASSAGEQLAYQAAVDLVLVNKDYDQAITAFEA
FVIDYPESEYIANSHYWLGLVLYQQKKRKEARVAFLTVSEKFPESVKRADSLFKIGIIDEYLGELASAKEFYQKVLKEYP
NSSAAGLAQKQLNAL

Sequences:

>Translated_255_residues
MKKNNLQMAIILATFFSSSTFATAPVSDVTGSASGVTGSVSVVTAAEGVSVEKQLEKFARLLESRNRMQIIMQNQLTQLS
KELREIKGGMELFEHKISEIENRQRNLYQLVDQPKAVSTPTTANSTATASSAGEQLAYQAAVDLVLVNKDYDQAITAFEA
FVIDYPESEYIANSHYWLGLVLYQQKKRKEARVAFLTVSEKFPESVKRADSLFKIGIIDEYLGELASAKEFYQKVLKEYP
NSSAAGLAQKQLNAL
>Mature_255_residues
MKKNNLQMAIILATFFSSSTFATAPVSDVTGSASGVTGSVSVVTAAEGVSVEKQLEKFARLLESRNRMQIIMQNQLTQLS
KELREIKGGMELFEHKISEIENRQRNLYQLVDQPKAVSTPTTANSTATASSAGEQLAYQAAVDLVLVNKDYDQAITAFEA
FVIDYPESEYIANSHYWLGLVLYQQKKRKEARVAFLTVSEKFPESVKRADSLFKIGIIDEYLGELASAKEFYQKVLKEYP
NSSAAGLAQKQLNAL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=227, Percent_Identity=30.3964757709251, Blast_Score=118, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28252; Mature: 28252

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNNLQMAIILATFFSSSTFATAPVSDVTGSASGVTGSVSVVTAAEGVSVEKQLEKFAR
CCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
LLESRNRMQIIMQNQLTQLSKELREIKGGMELFEHKISEIENRQRNLYQLVDQPKAVSTP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TTANSTATASSAGEQLAYQAAVDLVLVNKDYDQAITAFEAFVIDYPESEYIANSHYWLGL
CCCCCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHEECCCHHHEECCCHHHHH
VLYQQKKRKEARVAFLTVSEKFPESVKRADSLFKIGIIDEYLGELASAKEFYQKVLKEYP
HHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCC
NSSAAGLAQKQLNAL
CCCHHHHHHHHHHCC
>Mature Secondary Structure
MKKNNLQMAIILATFFSSSTFATAPVSDVTGSASGVTGSVSVVTAAEGVSVEKQLEKFAR
CCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
LLESRNRMQIIMQNQLTQLSKELREIKGGMELFEHKISEIENRQRNLYQLVDQPKAVSTP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TTANSTATASSAGEQLAYQAAVDLVLVNKDYDQAITAFEAFVIDYPESEYIANSHYWLGL
CCCCCCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHEECCCHHHEECCCHHHHH
VLYQQKKRKEARVAFLTVSEKFPESVKRADSLFKIGIIDEYLGELASAKEFYQKVLKEYP
HHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCC
NSSAAGLAQKQLNAL
CCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]