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The map label for this gene is yubD [H]

Identifier: 119944476

GI number: 119944476

Start: 897054

End: 897716

Strand: Direct

Name: yubD [H]

Synonym: Ping_0705

Alternate gene names: 119944476

Gene position: 897054-897716 (Clockwise)

Preceding gene: 119944475

Following gene: 119944477

Centisome position: 19.67

GC content: 39.06

Gene sequence:

>663_bases
ATGCAAGTTTATAAAGATGACGCAGTAAATTGGCTTTCAACGCTTGCAGATGAGAGTGTTGATTTATTAATTACAGACCC
ACCCTATGAGTCACTGGAGAAGCATCGGAAAATTGGCACAACGACAAGACTGAAAGTGAGTAAAGCATCAAGCAATGAAT
GGTTTGGTATCTTCTCCAATGATCGTTTTGAAAGCTTGCTAACCGAGATATATCGAGTCCTAAAGAAAAACTCACATTTC
TATTTATTCTGTGATCAAGAAACAATGTTTGTAATAAAGCCGATTGCTGAAAAAGTAGGTTTTAAATTTTGGAAGCCAAT
TATCTGGGATAAGGTTTGTATTGGCATGGGTTATCATTACAGAGCCCGTCATGAATATATTCTGTTTTTTGAAAAAGGTA
AGAAAAAACTAAATAATTTAGCCACGCCAGATATCCTTGAATACAAACGCGTTTTCCGGGGTTACCCAACAGAAAAACCA
GTACCGCTAATGGAAACCTTGATTGCTCAAAGCAGTGTTAAGGGGGAGTTGGTCATCGATCCTTTTTTTGGCTCAGGGGC
AACGTTGGTAGCGGCACAAAATCTGGAACGCCGATACAGTGGCTGTGATCTCTCAGAGTCGGCACACCAACACTATCAAA
ATAGAATACTTGAAAAACGATAA

Upstream 100 bases:

>100_bases
TAGCGAAGCTATTGTATAGATTGCCGTTATCTGAACAAAGGTGTAGTCTCTAACGTTTACAAAAATGGACGTGTGTGTGG
CACTTTGAGATCGAGGTATA

Downstream 100 bases:

>100_bases
GTTATTTAACGGGGCACATAACGGCTATTGACGCTAACCGAGGACAGGCAAACCTTTTTGCTGTGTTCGCTATGCCTTCC
CGCATTATCGCTTTACAGCT

Product: DNA methylase N-4/N-6 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MQVYKDDAVNWLSTLADESVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNEWFGIFSNDRFESLLTEIYRVLKKNSHF
YLFCDQETMFVIKPIAEKVGFKFWKPIIWDKVCIGMGYHYRARHEYILFFEKGKKKLNNLATPDILEYKRVFRGYPTEKP
VPLMETLIAQSSVKGELVIDPFFGSGATLVAAQNLERRYSGCDLSESAHQHYQNRILEKR

Sequences:

>Translated_220_residues
MQVYKDDAVNWLSTLADESVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNEWFGIFSNDRFESLLTEIYRVLKKNSHF
YLFCDQETMFVIKPIAEKVGFKFWKPIIWDKVCIGMGYHYRARHEYILFFEKGKKKLNNLATPDILEYKRVFRGYPTEKP
VPLMETLIAQSSVKGELVIDPFFGSGATLVAAQNLERRYSGCDLSESAHQHYQNRILEKR
>Mature_220_residues
MQVYKDDAVNWLSTLADESVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNEWFGIFSNDRFESLLTEIYRVLKKNSHF
YLFCDQETMFVIKPIAEKVGFKFWKPIIWDKVCIGMGYHYRARHEYILFFEKGKKKLNNLATPDILEYKRVFRGYPTEKP
VPLMETLIAQSSVKGELVIDPFFGSGATLVAAQNLERRYSGCDLSESAHQHYQNRILEKR

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: NA

Molecular weight: Translated: 25660; Mature: 25660

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVYKDDAVNWLSTLADESVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNEWFGIFSN
CCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEECC
DRFESLLTEIYRVLKKNSHFYLFCDQETMFVIKPIAEKVGFKFWKPIIWDKVCIGMGYHY
CHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHCHHHHHHHHHHHHHHCCCCCE
RARHEYILFFEKGKKKLNNLATPDILEYKRVFRGYPTEKPVPLMETLIAQSSVKGELVID
ECCCCEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEE
PFFGSGATLVAAQNLERRYSGCDLSESAHQHYQNRILEKR
CCCCCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQVYKDDAVNWLSTLADESVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNEWFGIFSN
CCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEECC
DRFESLLTEIYRVLKKNSHFYLFCDQETMFVIKPIAEKVGFKFWKPIIWDKVCIGMGYHY
CHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHHCHHHHHHHHHHHHHHCCCCCE
RARHEYILFFEKGKKKLNNLATPDILEYKRVFRGYPTEKPVPLMETLIAQSSVKGELVID
ECCCCEEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEE
PFFGSGATLVAAQNLERRYSGCDLSESAHQHYQNRILEKR
CCCCCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]