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The map label for this gene is rbpD [H]

Identifier: 119944409

GI number: 119944409

Start: 821157

End: 821639

Strand: Reverse

Name: rbpD [H]

Synonym: Ping_0637

Alternate gene names: 119944409

Gene position: 821639-821157 (Counterclockwise)

Preceding gene: 119944418

Following gene: 119944408

Centisome position: 18.02

GC content: 39.96

Gene sequence:

>483_bases
ATGAAATCAAACACATCCGTGTTGCTTTCAATCGTCATTGCGATTGTAGGTTTTGCTGTGATTAAACTATCCCAGTTAAC
AATTGATGGCGCATTTTTATTCGCAATCGGCGCATTAGCCAGCGGAATAGCGCTTCAATTTCGTGGTACAAAAAAATCTG
TTAGTCCTAAAAAAGAGGTCAGTGAAGGTGATTTTTCCACCACAACTCTTTATGTAGGTAACTTACCTTATCGGGCAAAT
GAAATGGCGATACGGTCTCTTTTTTCTGAGCATGGTCAGGTTCTTTCAGTACGTTTAATGAAAGATAAACACACCGGCAA
ACGTCGTGGTTTTGGGTTCGTCGAAATGCCTGAAAAAGATGCTAATAATGCAATCAATGCATTAAATGAATTTGAGTTCC
AAGAACGTTCTTTAAAAGTTCGCGAAGCAAACGAACGAGCTCCTCAAGCAGAATCAGCGCCAACATCAGATAAGCCTCTT
TAA

Upstream 100 bases:

>100_bases
TTAAATCGGAACGCAACGTTTGCGAAGCAACAACTTAATTTAAACTATTGGTAACTCCACACTCATTATTTTTTCTATTT
ATCTTTGAGGTTATTTTATT

Downstream 100 bases:

>100_bases
ATTTAAAGTGACATTTCAAACGCTCTTTGGAGCGTTTTTATGCTTTGTTGCCACCATCGATTATCATCAGAGCCCCTAAA
AGCGAGACGAATACCCCCTT

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MKSNTSVLLSIVIAIVGFAVIKLSQLTIDGAFLFAIGALASGIALQFRGTKKSVSPKKEVSEGDFSTTTLYVGNLPYRAN
EMAIRSLFSEHGQVLSVRLMKDKHTGKRRGFGFVEMPEKDANNAINALNEFEFQERSLKVREANERAPQAESAPTSDKPL

Sequences:

>Translated_160_residues
MKSNTSVLLSIVIAIVGFAVIKLSQLTIDGAFLFAIGALASGIALQFRGTKKSVSPKKEVSEGDFSTTTLYVGNLPYRAN
EMAIRSLFSEHGQVLSVRLMKDKHTGKRRGFGFVEMPEKDANNAINALNEFEFQERSLKVREANERAPQAESAPTSDKPL
>Mature_160_residues
MKSNTSVLLSIVIAIVGFAVIKLSQLTIDGAFLFAIGALASGIALQFRGTKKSVSPKKEVSEGDFSTTTLYVGNLPYRAN
EMAIRSLFSEHGQVLSVRLMKDKHTGKRRGFGFVEMPEKDANNAINALNEFEFQERSLKVREANERAPQAESAPTSDKPL

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=103, Percent_Identity=38.8349514563107, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI4557493, Length=81, Percent_Identity=43.2098765432099, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=81, Percent_Identity=43.2098765432099, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=42.3076923076923, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=39.7435897435897, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI17137710, Length=89, Percent_Identity=42.6966292134831, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 17506; Mature: 17506

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNTSVLLSIVIAIVGFAVIKLSQLTIDGAFLFAIGALASGIALQFRGTKKSVSPKKEV
CCCCHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCEEEEECCCCCCCCCHHHC
SEGDFSTTTLYVGNLPYRANEMAIRSLFSEHGQVLSVRLMKDKHTGKRRGFGFVEMPEKD
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEECCCCC
ANNAINALNEFEFQERSLKVREANERAPQAESAPTSDKPL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKSNTSVLLSIVIAIVGFAVIKLSQLTIDGAFLFAIGALASGIALQFRGTKKSVSPKKEV
CCCCHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCEEEEECCCCCCCCCHHHC
SEGDFSTTTLYVGNLPYRANEMAIRSLFSEHGQVLSVRLMKDKHTGKRRGFGFVEMPEKD
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEECCCCC
ANNAINALNEFEFQERSLKVREANERAPQAESAPTSDKPL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]